Cardamine hirsuta (cardamine_hirsuta)
Imported from atlas release summary for Cardamine hirsuta.
2106
Candidate Protein Records
1757
Pathway-Level Records
4167
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4167
Family-Level Calls
BAHD
6.96%
C4H
6.07%
C3'H/CYP98A
5.81%
IFS
4.15%
CYP76
3.72%
UGT
3.6%
4CL
3.53%
POD
3.48%
Other Families
62.68%
More Families (95)
NMT
140
3.36%
T3O
135
3.24%
UFGT
134
3.22%
7DLGT
132
3.17%
F3H
114
2.74%
BR6OX2/CYP85A2
94
2.26%
DWF4/CYP90B1
93
2.23%
SMT1/SMT2/SMT3
78
1.87%
SGD
71
1.7%
CODM/T6ODM
69
1.66%
STR
66
1.58%
CAS
64
1.54%
CYP71
60
1.44%
TRI/TRII
57
1.37%
TPS
57
1.37%
H6H
56
1.34%
F3'H/CYP75B
55
1.32%
GES
52
1.25%
CSE
49
1.18%
CAD
47
1.13%
T16H
41
0.98%
IFR
38
0.91%
FNS
38
0.91%
F5H/CYP84A
35
0.84%
G8O/G8H
34
0.82%
BBE
31
0.74%
SLS
30
0.72%
PYKS
29
0.7%
COMT
29
0.7%
CYP90D1
28
0.67%
LAC
27
0.65%
ANR
25
0.6%
RAS
25
0.6%
7DLH
24
0.58%
F3'5'H/CYP75A
23
0.55%
TAT
23
0.55%
BR6OX1/CYP85A1
23
0.55%
HCT
22
0.53%
CCR
22
0.53%
IO
20
0.48%
GS
20
0.48%
NCS
19
0.46%
LAMT
19
0.46%
CPD/CYP90A1
19
0.46%
GGPPS
19
0.46%
16OMT
18
0.43%
8HGO
17
0.41%
DFR
16
0.38%
SQE
16
0.38%
ANS/LDOX
15
0.36%
CPR
15
0.36%
CNMT
14
0.34%
ROT3/CYP90C1
14
0.34%
COR
13
0.31%
CYP51G1
13
0.31%
PMT
11
0.26%
FPPS
11
0.26%
MPO
10
0.24%
AACT
10
0.24%
PAL
9
0.22%
CCoAOMT
8
0.19%
HPPR
8
0.19%
SMO1/SMO2
8
0.19%
CHI
7
0.17%
DWF7
7
0.17%
MVK
7
0.17%
CYP80B1
6
0.14%
PMK
6
0.14%
SQS/FDFT1
5
0.12%
DET2
5
0.12%
MVD
5
0.12%
DXS
5
0.12%
TDC
4
0.1%
CYP719
4
0.1%
CHS
4
0.1%
DWF1
4
0.1%
CYP80F1
3
0.07%
MCT/IspD
3
0.07%
ADC
2
0.05%
TYDC_DDC
2
0.05%
ISY
2
0.05%
FLS
2
0.05%
HYD1
2
0.05%
HMGR
2
0.05%
IDI
2
0.05%
CMK/IspE
2
0.05%
6OMT_4OMT_SOMT
1
0.02%
DWF5
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
MDS/IspF
1
0.02%
HDR/IspH
1
0.02%
HMGS
1
0.02%
HDS/IspG
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 556 | 20 | BAHD (247) | View species results |
| Alkaloid pathway | 416 | 19 | NMT (83) | View species results |
| Phenylpropanoid pathway | 320 | 11 | POD (141) | View species results |
| Flavonoid pathway | 190 | 10 | UFGT (125) | View species results |
| Steroid pathway | 143 | 11 | SMT1/SMT2/SMT3 (56) | View species results |
| Rosmarinic acid pathway | 132 | 7 | C4H (54) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1577 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 337 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| ChirNSCAFA.1930003290.7 | Alkaloid | NMT | medium | pass |
| ChirNSCAFA.1930003290.8 | Alkaloid | NMT | medium | pass |
| ChirNSCAFA.2300004400.1 | Alkaloid | NMT | medium | pass |
| ChirNSCAFC.760011190.1 | Alkaloid | NMT | medium | pass |
| ChirNSCAFC.760011190.2 | Alkaloid | NMT | medium | pass |
| ChirNSCAFC.760011190.3 | Alkaloid | NMT | medium | pass |
| Chir01G0024110.1 | Alkaloid | PMT | medium | borderline |
| Chir01G0045950.1 | Alkaloid | PMT | low | borderline |
| Chir02G0017370.1 | Alkaloid | PMT | medium | borderline |
| Chir03G0031770.1 | Alkaloid | PMT | low | borderline |
| Chir05G0013920.1 | Alkaloid | PMT | low | borderline |
| Chir05G0028950.1 | Alkaloid | PMT | medium | pass |
| Chir06G0019870.1 | Alkaloid | PMT | medium | pass |
| Chir07G0019520.1 | Alkaloid | PMT | low | borderline |
| Chir08G0018210.1 | Alkaloid | PMT | medium | borderline |
| Chir08G0018210.2 | Alkaloid | PMT | medium | borderline |
| Chir08G0029480.1 | Alkaloid | PMT | low | borderline |
| Chir01G0000180.1 | Alkaloid | PYKS | high | pass |
| Chir01G0001230.1 | Alkaloid | PYKS | low | borderline |
| Chir01G0003440.1 | Alkaloid | PYKS | low | borderline |
| Chir01G0007390.1 | Alkaloid | PYKS | low | borderline |
| Chir01G0007400.1 | Alkaloid | PYKS | low | borderline |
| Chir01G0019910.1 | Alkaloid | PYKS | low | borderline |
| Chir01G0025900.1 | Alkaloid | PYKS | low | borderline |
| Chir02G0003170.1 | Alkaloid | PYKS | low | borderline |
| Chir02G0015230.1 | Alkaloid | PYKS | low | borderline |
| Chir02G0018390.1 | Alkaloid | PYKS | low | borderline |
| Chir02G0018390.2 | Alkaloid | PYKS | low | borderline |
| Chir03G0030710.1 | Alkaloid | PYKS | low | borderline |
| Chir03G0031670.1 | Alkaloid | PYKS | low | borderline |
| Chir04G0003360.1 | Alkaloid | PYKS | low | borderline |
| Chir04G0006810.1 | Alkaloid | PYKS | low | borderline |
| Chir04G0010020.1 | Alkaloid | PYKS | low | borderline |
| Chir04G0030370.1 | Alkaloid | PYKS | low | borderline |
| Chir05G0018370.1 | Alkaloid | PYKS | low | borderline |
| Chir06G0006220.1 | Alkaloid | PYKS | low | borderline |
| Chir06G0009150.1 | Alkaloid | PYKS | low | borderline |
| Chir06G0013420.1 | Alkaloid | PYKS | low | borderline |
| Chir06G0026000.1 | Alkaloid | PYKS | high | pass |
| Chir06G0035240.1 | Alkaloid | PYKS | low | borderline |
| Chir07G0030160.1 | Alkaloid | PYKS | low | borderline |
| Chir07G0030510.1 | Alkaloid | PYKS | low | borderline |
| Chir07G0030520.1 | Alkaloid | PYKS | low | borderline |
| Chir07G0030530.1 | Alkaloid | PYKS | low | borderline |
| Chir07G0030760.1 | Alkaloid | PYKS | high | pass |
| Chir08G0000140.1 | Alkaloid | PYKS | high | pass |
| Chir01G0002080.1 | Alkaloid | SGD | medium | pass |
| Chir01G0025300.1 | Alkaloid | SGD | medium | pass |
| Chir01G0041530.1 | Alkaloid | SGD | medium | pass |
| Chir01G0041530.2 | Alkaloid | SGD | medium | pass |