Carnegiea gigantea (carnegiea_gigantea)
/
Imported from atlas release summary for Carnegiea gigantea.
1321
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1321
Candidate Genes
C3'H/CYP98A
6.66%
C4H
6.5%
BAHD
4.77%
CYP76
3.95%
POD
3.76%
T3O
3.73%
4CL
3.73%
IFS
3.56%
Other Families
63.34%
More Families (97)
UGT
108
3.05%
NMT
100
2.82%
7DLGT
97
2.74%
UFGT
96
2.71%
F3'H/CYP75B
90
2.54%
BR6OX2/CYP85A2
83
2.34%
F3H
79
2.23%
DWF4/CYP90B1
69
1.95%
CODM/T6ODM
64
1.81%
CYP71
64
1.81%
TRI/TRII
56
1.58%
COMT
54
1.52%
TPS
52
1.47%
CAD
48
1.36%
CAS
48
1.36%
STR
46
1.3%
G8O/G8H
45
1.27%
PYKS
41
1.16%
SMT1/SMT2/SMT3
38
1.07%
H6H
37
1.04%
T16H
37
1.04%
GES
36
1.02%
IFR
36
1.02%
F3'5'H/CYP75A
35
0.99%
CYP90D1
33
0.93%
LAC
29
0.82%
7DLH
28
0.79%
HCT
28
0.79%
CSE
28
0.79%
IO
27
0.76%
CYP51G1
27
0.76%
BBE
26
0.73%
PMT
24
0.68%
SGD
22
0.62%
FNS
22
0.62%
RAS
22
0.62%
BR6OX1/CYP85A1
22
0.62%
GS
21
0.59%
SLS
20
0.56%
FPPS
19
0.54%
16OMT
18
0.51%
ANS/LDOX
18
0.51%
CNMT
16
0.45%
ANR
16
0.45%
F5H/CYP84A
16
0.45%
CPD/CYP90A1
16
0.45%
CCR
15
0.42%
TAT
15
0.42%
CHS
13
0.37%
8HGO
12
0.34%
CPR
12
0.34%
DFR
11
0.31%
CCoAOMT
10
0.28%
CYP719
9
0.25%
COR
9
0.25%
NCS
9
0.25%
PAL
9
0.25%
LAMT
8
0.23%
FLS
8
0.23%
CYP80B1
7
0.2%
XMT_MXMT_DXMT
7
0.2%
HPPR
7
0.2%
SQE
7
0.2%
AACT
7
0.2%
HMGR
7
0.2%
SQS/FDFT1
6
0.17%
ROT3/CYP90C1
6
0.17%
TDC
5
0.14%
MPO
5
0.14%
ISY
5
0.14%
DWF7
5
0.14%
SMO1/SMO2
5
0.14%
GGPPS
5
0.14%
MVD
5
0.14%
TYDC_DDC
4
0.11%
6OMT_4OMT_SOMT
4
0.11%
HDR/IspH
4
0.11%
MVK
4
0.11%
DXR
4
0.11%
MDS/IspF
4
0.11%
HYD1
3
0.08%
DET2
3
0.08%
HMGS
3
0.08%
IDI
3
0.08%
DXS
3
0.08%
MCT/IspD
3
0.08%
CHI
2
0.06%
DWF1
2
0.06%
CMK/IspE
2
0.06%
HDS/IspG
2
0.06%
ADC
1
0.03%
CYP80F1
1
0.03%
CPI1
1
0.03%
FK
1
0.03%
DWF5
1
0.03%
PMK
1
0.03%
GPPS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 387 | 19 | BAHD (134) | View species results |
| Phenylpropanoid pathway | 293 | 11 | POD (120) | View species results |
| Alkaloid pathway | 276 | 19 | NMT (47) | View species results |
| Flavonoid pathway | 152 | 12 | UFGT (82) | View species results |
| Rosmarinic acid pathway | 124 | 7 | C4H (56) | View species results |
| Steroid pathway | 89 | 13 | CAS (38) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1499 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 219 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cgig1_01520 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Cgig1_02517 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Cgig1_03258 | Flavonoid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| Cgig1_03469 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Cgig1_04176 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Cgig1_04604 | Flavonoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Cgig1_05284 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Cgig1_05640 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Cgig1_08230 | Flavonoid | 4CL | medium | pass | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Cgig1_08231 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Cgig1_08232 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Cgig1_08815 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Cgig1_09374 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Cgig1_09534 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Cgig1_09904 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Cgig1_10034 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Cgig1_10290 | Flavonoid | 4CL | medium | pass | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| Cgig1_10351 | Flavonoid | 4CL | low | borderline | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Cgig1_10352 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Cgig1_10637 | Flavonoid | 4CL | low | borderline | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Cgig1_12513 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Cgig1_13289 | Flavonoid | 4CL | low | borderline | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| Cgig1_13919 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Cgig1_14437 | Flavonoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Cgig1_14479 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Cgig1_14673 | Flavonoid | 4CL | low | borderline | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| Cgig1_16102 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Cgig1_16351 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Cgig1_17455 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Cgig1_17474 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Cgig1_21015 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Cgig1_21016 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Cgig1_21165 | Flavonoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Cgig1_21616 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Cgig1_21851 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Cgig1_22460 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Cgig1_22600 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Cgig1_22893 | Flavonoid | 4CL | low | borderline | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| Cgig1_23107 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Cgig1_23631 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Cgig1_24278 | Flavonoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Cgig1_25437 | Flavonoid | 4CL | low | borderline | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Cgig1_26576 | Flavonoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Cgig1_28071 | Flavonoid | 4CL | medium | pass | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| Cgig1_01520 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Cgig1_02517 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Cgig1_03258 | Phenylpropanoid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| Cgig1_03469 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Cgig1_04176 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Cgig1_04604 | Phenylpropanoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |