PlantSME Plant secondary metabolism enzyme database

Carnegiea gigantea (carnegiea_gigantea)

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Imported from atlas release summary for Carnegiea gigantea.

1321
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.3% Phenylpropanoid pathway 22.18% Alkaloid pathway 20.89% Flavonoid pathway 11.51% Rosmarinic acid pathway 9.39% Steroid pathway 6.74%
Family Distribution
C3'H/CYP98A 6.66% C4H 6.5% BAHD 4.77% CYP76 3.95% POD 3.76% T3O 3.73% 4CL 3.73% IFS 3.56%
Other Families 63.34%
More Families (97)
UGT 108 3.05% NMT 100 2.82% 7DLGT 97 2.74% UFGT 96 2.71% F3'H/CYP75B 90 2.54% BR6OX2/CYP85A2 83 2.34% F3H 79 2.23% DWF4/CYP90B1 69 1.95% CODM/T6ODM 64 1.81% CYP71 64 1.81% TRI/TRII 56 1.58% COMT 54 1.52% TPS 52 1.47% CAD 48 1.36% CAS 48 1.36% STR 46 1.3% G8O/G8H 45 1.27% PYKS 41 1.16% SMT1/SMT2/SMT3 38 1.07% H6H 37 1.04% T16H 37 1.04% GES 36 1.02% IFR 36 1.02% F3'5'H/CYP75A 35 0.99% CYP90D1 33 0.93% LAC 29 0.82% 7DLH 28 0.79% HCT 28 0.79% CSE 28 0.79% IO 27 0.76% CYP51G1 27 0.76% BBE 26 0.73% PMT 24 0.68% SGD 22 0.62% FNS 22 0.62% RAS 22 0.62% BR6OX1/CYP85A1 22 0.62% GS 21 0.59% SLS 20 0.56% FPPS 19 0.54% 16OMT 18 0.51% ANS/LDOX 18 0.51% CNMT 16 0.45% ANR 16 0.45% F5H/CYP84A 16 0.45% CPD/CYP90A1 16 0.45% CCR 15 0.42% TAT 15 0.42% CHS 13 0.37% 8HGO 12 0.34% CPR 12 0.34% DFR 11 0.31% CCoAOMT 10 0.28% CYP719 9 0.25% COR 9 0.25% NCS 9 0.25% PAL 9 0.25% LAMT 8 0.23% FLS 8 0.23% CYP80B1 7 0.2% XMT_MXMT_DXMT 7 0.2% HPPR 7 0.2% SQE 7 0.2% AACT 7 0.2% HMGR 7 0.2% SQS/FDFT1 6 0.17% ROT3/CYP90C1 6 0.17% TDC 5 0.14% MPO 5 0.14% ISY 5 0.14% DWF7 5 0.14% SMO1/SMO2 5 0.14% GGPPS 5 0.14% MVD 5 0.14% TYDC_DDC 4 0.11% 6OMT_4OMT_SOMT 4 0.11% HDR/IspH 4 0.11% MVK 4 0.11% DXR 4 0.11% MDS/IspF 4 0.11% HYD1 3 0.08% DET2 3 0.08% HMGS 3 0.08% IDI 3 0.08% DXS 3 0.08% MCT/IspD 3 0.08% CHI 2 0.06% DWF1 2 0.06% CMK/IspE 2 0.06% HDS/IspG 2 0.06% ADC 1 0.03% CYP80F1 1 0.03% CPI1 1 0.03% FK 1 0.03% DWF5 1 0.03% PMK 1 0.03% GPPS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 BAHD (134) View species results
Phenylpropanoid pathway 293 11 POD (120) View species results
Alkaloid pathway 276 19 NMT (47) View species results
Flavonoid pathway 152 12 UFGT (82) View species results
Rosmarinic acid pathway 124 7 C4H (56) View species results
Steroid pathway 89 13 CAS (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1499 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 219 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
Cgig1_05284 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Cgig1_05640 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Cgig1_08230 Phenylpropanoid 4CL medium pass 4CL__00015__sp_Q9LU36_4CL4_ARATH
Cgig1_08231 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Cgig1_08232 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Cgig1_08815 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Cgig1_09374 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Cgig1_09534 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Cgig1_09904 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Cgig1_10034 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Cgig1_10290 Phenylpropanoid 4CL medium pass 4CL__00017__sp_Q9S725_4CL2_ARATH
Cgig1_10351 Phenylpropanoid 4CL low borderline 4CL__00004__sp_O24146_4CL2_TOBAC
Cgig1_10352 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Cgig1_10637 Phenylpropanoid 4CL low borderline 4CL__00018__sp_Q9S777_4CL3_ARATH
Cgig1_12513 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Cgig1_13289 Phenylpropanoid 4CL low borderline 4CL__00017__sp_Q9S725_4CL2_ARATH
Cgig1_13919 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Cgig1_14437 Phenylpropanoid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH
Cgig1_14479 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Cgig1_14673 Phenylpropanoid 4CL low borderline 4CL__00017__sp_Q9S725_4CL2_ARATH
Cgig1_16102 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Cgig1_16351 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Cgig1_17455 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Cgig1_17474 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Cgig1_21015 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Cgig1_21016 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Cgig1_21165 Phenylpropanoid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH
Cgig1_21616 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Cgig1_21851 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Cgig1_22460 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Cgig1_22600 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Cgig1_22893 Phenylpropanoid 4CL low borderline 4CL__00008__sp_Q42982_4CL2_ORYSJ
Cgig1_23107 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Cgig1_23631 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Cgig1_24278 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Cgig1_25437 Phenylpropanoid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
Cgig1_26576 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Cgig1_28071 Phenylpropanoid 4CL medium pass 4CL__00008__sp_Q42982_4CL2_ORYSJ
Cgig1_01520 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Cgig1_02517 Rosmarinic Acid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Cgig1_03258 Rosmarinic Acid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
Cgig1_03469 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Cgig1_04176 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Cgig1_04604 Rosmarinic Acid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
Cgig1_05284 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Cgig1_05640 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Cgig1_08230 Rosmarinic Acid 4CL medium pass 4CL__00015__sp_Q9LU36_4CL4_ARATH
Cgig1_08231 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Cgig1_08232 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Cgig1_08815 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY