PlantSME Plant secondary metabolism enzyme database

Carnegiea gigantea (carnegiea_gigantea)

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Imported from atlas release summary for Carnegiea gigantea.

1321
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.3% Phenylpropanoid pathway 22.18% Alkaloid pathway 20.89% Flavonoid pathway 11.51% Rosmarinic acid pathway 9.39% Steroid pathway 6.74%
Family Distribution
C3'H/CYP98A 6.66% C4H 6.5% BAHD 4.77% CYP76 3.95% POD 3.76% T3O 3.73% 4CL 3.73% IFS 3.56%
Other Families 63.34%
More Families (97)
UGT 108 3.05% NMT 100 2.82% 7DLGT 97 2.74% UFGT 96 2.71% F3'H/CYP75B 90 2.54% BR6OX2/CYP85A2 83 2.34% F3H 79 2.23% DWF4/CYP90B1 69 1.95% CODM/T6ODM 64 1.81% CYP71 64 1.81% TRI/TRII 56 1.58% COMT 54 1.52% TPS 52 1.47% CAD 48 1.36% CAS 48 1.36% STR 46 1.3% G8O/G8H 45 1.27% PYKS 41 1.16% SMT1/SMT2/SMT3 38 1.07% H6H 37 1.04% T16H 37 1.04% GES 36 1.02% IFR 36 1.02% F3'5'H/CYP75A 35 0.99% CYP90D1 33 0.93% LAC 29 0.82% 7DLH 28 0.79% HCT 28 0.79% CSE 28 0.79% IO 27 0.76% CYP51G1 27 0.76% BBE 26 0.73% PMT 24 0.68% SGD 22 0.62% FNS 22 0.62% RAS 22 0.62% BR6OX1/CYP85A1 22 0.62% GS 21 0.59% SLS 20 0.56% FPPS 19 0.54% 16OMT 18 0.51% ANS/LDOX 18 0.51% CNMT 16 0.45% ANR 16 0.45% F5H/CYP84A 16 0.45% CPD/CYP90A1 16 0.45% CCR 15 0.42% TAT 15 0.42% CHS 13 0.37% 8HGO 12 0.34% CPR 12 0.34% DFR 11 0.31% CCoAOMT 10 0.28% CYP719 9 0.25% COR 9 0.25% NCS 9 0.25% PAL 9 0.25% LAMT 8 0.23% FLS 8 0.23% CYP80B1 7 0.2% XMT_MXMT_DXMT 7 0.2% HPPR 7 0.2% SQE 7 0.2% AACT 7 0.2% HMGR 7 0.2% SQS/FDFT1 6 0.17% ROT3/CYP90C1 6 0.17% TDC 5 0.14% MPO 5 0.14% ISY 5 0.14% DWF7 5 0.14% SMO1/SMO2 5 0.14% GGPPS 5 0.14% MVD 5 0.14% TYDC_DDC 4 0.11% 6OMT_4OMT_SOMT 4 0.11% HDR/IspH 4 0.11% MVK 4 0.11% DXR 4 0.11% MDS/IspF 4 0.11% HYD1 3 0.08% DET2 3 0.08% HMGS 3 0.08% IDI 3 0.08% DXS 3 0.08% MCT/IspD 3 0.08% CHI 2 0.06% DWF1 2 0.06% CMK/IspE 2 0.06% HDS/IspG 2 0.06% ADC 1 0.03% CYP80F1 1 0.03% CPI1 1 0.03% FK 1 0.03% DWF5 1 0.03% PMK 1 0.03% GPPS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 BAHD (134) View species results
Phenylpropanoid pathway 293 11 POD (120) View species results
Alkaloid pathway 276 19 NMT (47) View species results
Flavonoid pathway 152 12 UFGT (82) View species results
Rosmarinic acid pathway 124 7 C4H (56) View species results
Steroid pathway 89 13 CAS (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1499 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 219 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Cgig1_20538 Flavonoid F3H medium borderline
Cgig1_20540 Flavonoid F3H medium borderline
Cgig1_21089 Flavonoid F3H medium borderline
Cgig1_21183 Flavonoid F3H medium borderline
Cgig1_22333 Flavonoid F3H medium borderline
Cgig1_22334 Flavonoid F3H medium borderline
Cgig1_22722 Flavonoid F3H medium borderline
Cgig1_23194 Flavonoid F3H medium borderline
Cgig1_23272 Flavonoid F3H medium borderline
Cgig1_23389 Flavonoid F3H medium borderline
Cgig1_23479 Flavonoid F3H medium borderline
Cgig1_24324 Flavonoid F3H medium borderline
Cgig1_24581 Flavonoid F3H medium borderline
Cgig1_24582 Flavonoid F3H medium borderline
Cgig1_24835 Flavonoid F3H medium borderline
Cgig1_25893 Flavonoid F3H low borderline
Cgig1_25967 Flavonoid F3H medium borderline
Cgig1_26109 Flavonoid F3H low borderline
Cgig1_26138 Flavonoid F3H low borderline
Cgig1_26275 Flavonoid F3H medium borderline
Cgig1_26397 Flavonoid F3H low borderline
Cgig1_26407 Flavonoid F3H low borderline
Cgig1_26413 Flavonoid F3H medium borderline
Cgig1_26544 Flavonoid F3H medium borderline
Cgig1_26555 Flavonoid F3H medium borderline
Cgig1_27617 Flavonoid F3H medium borderline
Cgig1_27880 Flavonoid F3H low borderline
Cgig1_28061 Flavonoid F3H medium pass
Cgig1_28284 Flavonoid F3H medium borderline