PlantSME Plant secondary metabolism enzyme database

Carya cathayensis (carya_cathayensis)

Imported from atlas release summary for Carya cathayensis.

1758
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.92% Alkaloid pathway 21.96% Phenylpropanoid pathway 21.96% Flavonoid pathway 11.26% Rosmarinic acid pathway 7.62% Steroid pathway 7.28%
Family Distribution
C4H 5.8% C3'H/CYP98A 5.63% BAHD 5.42% CYP76 4.07% POD 4.0% IFS 3.88% UGT 3.62% 4CL 3.41%
Other Families 64.17%
More Families (96)
T3O 128 3.03% F3H 125 2.96% 7DLGT 118 2.79% UFGT 117 2.77% CAD 91 2.15% DWF4/CYP90B1 89 2.11% TPS 84 1.99% NMT 83 1.96% F3'H/CYP75B 82 1.94% CAS 81 1.92% CODM/T6ODM 78 1.85% BR6OX2/CYP85A2 74 1.75% GES 71 1.68% STR 63 1.49% SMT1/SMT2/SMT3 59 1.4% H6H 57 1.35% GS 54 1.28% CYP90D1 52 1.23% TRI/TRII 49 1.16% LAC 49 1.16% CYP71 47 1.11% T16H 45 1.06% IFR 45 1.06% HCT 45 1.06% PYKS 41 0.97% CSE 39 0.92% IO 38 0.9% COMT 35 0.83% BBE 31 0.73% G8O/G8H 30 0.71% RAS 30 0.71% NCS 29 0.69% TAT 27 0.64% F5H/CYP84A 26 0.62% LAMT 25 0.59% PMT 25 0.59% FNS 25 0.59% SLS 24 0.57% COR 23 0.54% 7DLH 21 0.5% SGD 21 0.5% F3'5'H/CYP75A 21 0.5% PAL 21 0.5% BR6OX1/CYP85A1 21 0.5% CNMT 20 0.47% 16OMT 19 0.45% DFR 19 0.45% ANR 17 0.4% ANS/LDOX 17 0.4% CCR 17 0.4% 8HGO 16 0.38% CHS 13 0.31% CPD/CYP90A1 13 0.31% CYP80B1 11 0.26% ROT3/CYP90C1 11 0.26% ISY 10 0.24% FPPS 10 0.24% MPO 9 0.21% CPR 9 0.21% SQS/FDFT1 9 0.21% SQE 9 0.21% GGPPS 9 0.21% CYP719 8 0.19% TYDC_DDC 7 0.17% CCoAOMT 7 0.17% HPPR 7 0.17% MVK 7 0.17% AACT 7 0.17% DXS 7 0.17% MVD 6 0.14% TDC 5 0.12% CHI 5 0.12% CYP51G1 5 0.12% SMO1/SMO2 5 0.12% DET2 5 0.12% HMGR 5 0.12% XMT_MXMT_DXMT 4 0.09% PMK 4 0.09% HMGS 4 0.09% 6OMT_4OMT_SOMT 3 0.07% CYP80F1 3 0.07% DWF1 3 0.07% CPI1 3 0.07% DWF5 3 0.07% MCT/IspD 3 0.07% ADC 2 0.05% ODC 2 0.05% DWF7 2 0.05% HDR/IspH 2 0.05% IDI 2 0.05% MDS/IspF 2 0.05% HDS/IspG 2 0.05% DXR 2 0.05% HYD1 1 0.02% FK 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 526 19 BAHD (180) View species results
Alkaloid pathway 386 26 GES (65) View species results
Phenylpropanoid pathway 386 12 POD (157) View species results
Flavonoid pathway 198 9 UFGT (111) View species results
Rosmarinic acid pathway 134 7 C4H (46) View species results
Steroid pathway 128 11 CAS (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1568 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 304 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
Ccatscaffold519970270920 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ccatscaffold542880277830 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ccatscaffold599500290120 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ccatscaffold602750291330 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ccatscaffold623420294470 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ccatscaffold667890302000 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ccatscaffold670080305450 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Ccatscaffold675190311810 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ccatscaffold677800314310 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ccatscaffold685540319580 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Ccatscaffold687690321440 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Ccatscaffold687690321450 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Ccatscaffold696480326110 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH