PlantSME Plant secondary metabolism enzyme database

Carya illinoinensis (carya_illinoinensis)

Imported from atlas release summary for Carya illinoinensis.

2200
Candidate Protein Records
1990
Pathway-Level Records
4881
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 29.05% Alkaloid pathway 21.61% Phenylpropanoid pathway 20.5% Flavonoid pathway 13.27% Rosmarinic acid pathway 8.64% Steroid pathway 6.93%
Family Distribution
C3'H/CYP98A 6.6% C4H 6.02% BAHD 4.69% CYP76 4.4% IFS 4.16% UGT 4.1% 7DLGT 3.97% UFGT 3.91%
Other Families 62.14%
More Families (96)
T3O 187 3.83% POD 165 3.38% 4CL 141 2.89% F3H 137 2.81% DWF4/CYP90B1 128 2.62% CAD 109 2.23% F3'H/CYP75B 101 2.07% BR6OX2/CYP85A2 96 1.97% CAS 88 1.8% NMT 77 1.58% CODM/T6ODM 77 1.58% TPS 74 1.52% STR 72 1.48% GES 71 1.45% TRI/TRII 64 1.31% H6H 62 1.27% LAC 59 1.21% SMT1/SMT2/SMT3 59 1.21% CYP71 59 1.21% CYP90D1 57 1.17% HCT 56 1.15% COMT 49 1.0% GS 44 0.9% PYKS 43 0.88% 16OMT 42 0.86% IFR 40 0.82% T16H 37 0.76% RAS 37 0.76% ANR 36 0.74% CSE 36 0.74% TAT 36 0.74% G8O/G8H 33 0.68% BBE 32 0.66% SGD 29 0.59% PMT 29 0.59% IO 28 0.57% SLS 26 0.53% 8HGO 25 0.51% CPD/CYP90A1 25 0.51% LAMT 24 0.49% CCR 24 0.49% NCS 23 0.47% BR6OX1/CYP85A1 23 0.47% COR 21 0.43% F3'5'H/CYP75A 21 0.43% FNS 20 0.41% PAL 18 0.37% 7DLH 17 0.35% CNMT 16 0.33% F5H/CYP84A 14 0.29% ISY 13 0.27% CHS 13 0.27% CYP719 12 0.25% MPO 12 0.25% CCoAOMT 12 0.25% DFR 11 0.23% SQE 11 0.23% GGPPS 10 0.2% ROT3/CYP90C1 9 0.18% ANS/LDOX 8 0.16% CPR 8 0.16% SQS/FDFT1 8 0.16% HPPR 7 0.14% CYP51G1 7 0.14% AACT 7 0.14% MVK 7 0.14% TYDC_DDC 6 0.12% DET2 6 0.12% FPPS 6 0.12% MVD 6 0.12% CPI1 5 0.1% DXS 5 0.1% HMGR 5 0.1% CYP80B1 4 0.08% CYP80F1 4 0.08% CHI 4 0.08% SMO1/SMO2 4 0.08% 6OMT_4OMT_SOMT 3 0.06% PMK 3 0.06% IDI 3 0.06% ODC 2 0.04% ADC 2 0.04% TDC 2 0.04% HYD1 2 0.04% DWF7 2 0.04% MCT/IspD 2 0.04% CMK/IspE 2 0.04% DXR 2 0.04% MDS/IspF 2 0.04% HMGS 2 0.04% HDS/IspG 2 0.04% XMT_MXMT_DXMT 1 0.02% DWF5 1 0.02% DWF1 1 0.02% FK 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 578 20 UGT (189) View species results
Alkaloid pathway 430 22 7DLGT (80) View species results
Phenylpropanoid pathway 408 11 POD (162) View species results
Flavonoid pathway 264 10 UFGT (185) View species results
Rosmarinic acid pathway 172 7 C4H (77) View species results
Steroid pathway 138 11 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1922 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 322 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3'H/CYP75B
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Protein/Isoform Record Pathway Family Confidence Status Best Target
carya_illinoinensis_Caril.Q019700.1.p Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC