PlantSME Plant secondary metabolism enzyme database

Castanopsis hystrix (castanopsis_hystrix)

Imported from atlas release summary for Castanopsis hystrix.

1682
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.25% Alkaloid pathway 23.13% Phenylpropanoid pathway 18.19% Flavonoid pathway 13.56% Rosmarinic acid pathway 8.92% Steroid pathway 6.96%
Family Distribution
C4H 5.96% BAHD 5.89% C3'H/CYP98A 5.47% UGT 5.32% 7DLGT 4.66% UFGT 4.2% T3O 3.56% IFS 3.51%
Other Families 61.43%
More Families (96)
POD 142 3.48% CYP76 141 3.46% 4CL 135 3.31% F3H 110 2.7% DWF4/CYP90B1 86 2.11% NMT 85 2.09% CAD 83 2.04% F3'H/CYP75B 78 1.91% STR 70 1.72% TRI/TRII 68 1.67% CAS 67 1.64% BR6OX2/CYP85A2 64 1.57% H6H 62 1.52% CODM/T6ODM 56 1.37% SMT1/SMT2/SMT3 56 1.37% LAC 46 1.13% GS 44 1.08% HCT 44 1.08% CYP71 44 1.08% COMT 43 1.05% TPS 38 0.93% IFR 36 0.88% TAT 35 0.86% GES 34 0.83% PYKS 34 0.83% CYP90D1 34 0.83% T16H 33 0.81% SGD 32 0.79% G8O/G8H 29 0.71% RAS 29 0.71% FNS 28 0.69% PMT 27 0.66% 16OMT 27 0.66% BR6OX1/CYP85A1 27 0.66% IO 26 0.64% NCS 25 0.61% BBE 25 0.61% ANR 24 0.59% CSE 24 0.59% LAMT 22 0.54% SLS 21 0.52% F3'5'H/CYP75A 19 0.47% F5H/CYP84A 17 0.42% CPD/CYP90A1 17 0.42% 8HGO 15 0.37% PAL 15 0.37% CCR 15 0.37% ROT3/CYP90C1 15 0.37% COR 14 0.34% ANS/LDOX 13 0.32% CYP51G1 13 0.32% 7DLH 12 0.29% DFR 12 0.29% CNMT 11 0.27% ISY 11 0.27% TYDC_DDC 9 0.22% CCoAOMT 9 0.22% 6OMT_4OMT_SOMT 8 0.2% CHS 8 0.2% HPPR 8 0.2% DXS 8 0.2% GGPPS 8 0.2% MPO 7 0.17% CPR 7 0.17% SQS/FDFT1 7 0.17% AACT 7 0.17% CYP719 6 0.15% FPPS 6 0.15% TDC 5 0.12% CYP80B1 5 0.12% SQE 5 0.12% CYP80F1 4 0.1% ODC 4 0.1% DET2 4 0.1% MVK 4 0.1% MCT/IspD 4 0.1% HMGR 4 0.1% XMT_MXMT_DXMT 3 0.07% CHI 3 0.07% CPI1 3 0.07% MVD 3 0.07% DWF5 2 0.05% SMO1/SMO2 2 0.05% PMK 2 0.05% CMK/IspE 2 0.05% IDI 2 0.05% DXR 2 0.05% HDR/IspH 2 0.05% ADC 1 0.02% HYD1 1 0.02% DWF1 1 0.02% FK 1 0.02% DWF7 1 0.02% MDS/IspF 1 0.02% HMGS 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 492 19 UGT (194) View species results
Alkaloid pathway 389 21 7DLGT (86) View species results
Phenylpropanoid pathway 306 12 POD (115) View species results
Flavonoid pathway 228 10 UFGT (156) View species results
Rosmarinic acid pathway 150 7 C4H (62) View species results
Steroid pathway 117 12 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1445 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 313 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SMT1/SMT2/SMT3
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Gene Pathway Family Confidence Status Best Target
castanopsis_hystrix_GWHPBWDD035255 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00004__sp_Q4VNK0_SMTA_BRAOT
castanopsis_hystrix_GWHPBWDD036530 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
castanopsis_hystrix_GWHPBWDD036531 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
castanopsis_hystrix_GWHPBWDD036565 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
castanopsis_hystrix_GWHPBWDD036571 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
castanopsis_hystrix_GWHPBWDD037317 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH