PlantSME Plant secondary metabolism enzyme database

Centella asiatica (centella_asiatica)

Imported from atlas release summary for Centella asiatica.

1381
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.12% Alkaloid pathway 22.81% Phenylpropanoid pathway 20.42% Flavonoid pathway 12.67% Rosmarinic acid pathway 7.89% Steroid pathway 6.08%
Family Distribution
BAHD 6.78% C4H 6.14% C3'H/CYP98A 5.41% UGT 4.35% 7DLGT 4.04% 4CL 4.01% POD 4.01% UFGT 3.92%
Other Families 61.33%
More Families (96)
IFS 111 3.37% F3H 101 3.07% CYP76 95 2.89% T3O 87 2.65% NMT 71 2.16% F3'H/CYP75B 68 2.07% STR 63 1.92% DWF4/CYP90B1 61 1.85% CAD 58 1.76% CODM/T6ODM 56 1.7% BR6OX2/CYP85A2 53 1.61% H6H 48 1.46% CSE 46 1.4% SMT1/SMT2/SMT3 46 1.4% CYP71 45 1.37% LAC 44 1.34% TRI/TRII 43 1.31% HCT 41 1.25% TAT 38 1.16% CAS 38 1.16% GS 36 1.09% CYP90D1 35 1.06% G8O/G8H 34 1.03% IFR 33 1.0% 7DLH 29 0.88% PYKS 26 0.79% GES 26 0.79% SLS 26 0.79% RAS 26 0.79% TPS 26 0.79% PMT 25 0.76% NCS 24 0.73% ANR 24 0.73% T16H 21 0.64% FNS 21 0.64% SGD 20 0.61% IO 19 0.58% F5H/CYP84A 18 0.55% CCR 18 0.55% COMT 17 0.52% COR 16 0.49% F3'5'H/CYP75A 15 0.46% 16OMT 14 0.43% BBE 14 0.43% 8HGO 13 0.4% ANS/LDOX 12 0.36% PAL 12 0.36% CPD/CYP90A1 12 0.36% SQS/FDFT1 9 0.27% MPO 8 0.24% CYP51G1 8 0.24% LAMT 7 0.21% CPR 7 0.21% BR6OX1/CYP85A1 7 0.21% ROT3/CYP90C1 7 0.21% SQE 7 0.21% AACT 7 0.21% GGPPS 7 0.21% CNMT 6 0.18% ISY 6 0.18% HPPR 6 0.18% FPPS 6 0.18% CYP719 5 0.15% TYDC_DDC 5 0.15% CYP80B1 5 0.15% DFR 5 0.15% CCoAOMT 5 0.15% DWF1 5 0.15% HMGR 5 0.15% DET2 4 0.12% DXS 4 0.12% TDC 3 0.09% CHI 3 0.09% CHS 3 0.09% DWF7 3 0.09% SMO1/SMO2 3 0.09% MCT/IspD 3 0.09% MVK 3 0.09% MVD 3 0.09% CYP80F1 2 0.06% CPI1 2 0.06% HYD1 2 0.06% DWF5 2 0.06% PMK 2 0.06% MDS/IspF 2 0.06% HMGS 2 0.06% DXR 2 0.06% HDR/IspH 2 0.06% HDS/IspG 2 0.06% ADC 1 0.03% 6OMT_4OMT_SOMT 1 0.03% XMT_MXMT_DXMT 1 0.03% FK 1 0.03% GPPS 1 0.03% CMK/IspE 1 0.03% IDI 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 416 20 BAHD (177) View species results
Alkaloid pathway 315 21 7DLGT (71) View species results
Phenylpropanoid pathway 282 11 POD (124) View species results
Flavonoid pathway 175 10 UFGT (123) View species results
Rosmarinic acid pathway 109 7 TAT (30) View species results
Steroid pathway 84 13 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1143 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 290 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
centella_asiatica_evm.model.Scaffold_1.2300 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_1.4855 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_1.60 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_2.388 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_2.860 Alkaloid SGD low borderline
centella_asiatica_evm.model.Scaffold_4.147 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_4.4234 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_5.2367 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_5.2672 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_5.3588 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_5.3590 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_5.3796 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_6.2953 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_6.2957 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_7.1648 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_7.2197 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_7.524 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_8.2535 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_8.2536 Alkaloid SGD medium pass
centella_asiatica_evm.model.Scaffold_9.1243 Alkaloid SGD low borderline