PlantSME Plant secondary metabolism enzyme database

Chlamydomonas reinhardtii (chlamydomonas_reinhardtii)

Imported from atlas release summary for Chlamydomonas reinhardtii.

133
Candidate Genes
89
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.83% Alkaloid pathway 28.57% Phenylpropanoid pathway 18.05% Steroid pathway 13.53% Flavonoid pathway 5.26% Rosmarinic acid pathway 3.76%
Family Distribution
BAHD 6.64% C4H 6.2% 4CL 5.63% C3'H/CYP98A 5.48% STR 4.47% NMT 4.33% CYP76 3.61% IFR 3.32%
Other Families 60.32%
More Families (81)
POD 23 3.32% CYP71 19 2.74% DWF4/CYP90B1 18 2.6% GS 17 2.45% CNMT 17 2.45% FNS 17 2.45% IFS 16 2.31% T3O 15 2.16% TRI/TRII 15 2.16% CAD 14 2.02% SMT1/SMT2/SMT3 14 2.02% 8HGO 11 1.59% IO 10 1.44% CSE 10 1.44% CPR 10 1.44% CYP90D1 9 1.3% ANR 8 1.15% CYP719 6 0.87% PYKS 6 0.87% F3'H/CYP75B 6 0.87% BR6OX2/CYP85A2 6 0.87% MPO 5 0.72% BBE 5 0.72% SLS 5 0.72% ODC 5 0.72% UFGT 5 0.72% CAS 5 0.72% 16OMT 4 0.58% 7DLGT 4 0.58% F3'5'H/CYP75A 4 0.58% CCR 4 0.58% LAC 4 0.58% COMT 4 0.58% CPD/CYP90A1 4 0.58% SQS/FDFT1 4 0.58% DET2 4 0.58% AACT 4 0.58% MVK 4 0.58% CYP80F1 3 0.43% CODM/T6ODM 3 0.43% COR 3 0.43% PAL 3 0.43% F3H 3 0.43% CYP51G1 3 0.43% BR6OX1/CYP85A1 3 0.43% FPPS 3 0.43% UGT 3 0.43% GGPPS 3 0.43% G8O/G8H 2 0.29% PMT 2 0.29% H6H 2 0.29% T16H 2 0.29% CHI 2 0.29% DFR 2 0.29% TAT 2 0.29% CPI1 2 0.29% ROT3/CYP90C1 2 0.29% HYD1 2 0.29% HMGS 2 0.29% CMK/IspE 2 0.29% DXS 2 0.29% MCT/IspD 2 0.29% TYDC_DDC 1 0.14% TDC 1 0.14% ADC 1 0.14% CYP80B1 1 0.14% HCT 1 0.14% F5H/CYP84A 1 0.14% CCoAOMT 1 0.14% HPPR 1 0.14% FK 1 0.14% DWF7 1 0.14% SQE 1 0.14% SMO1/SMO2 1 0.14% MVD 1 0.14% PMK 1 0.14% HDR/IspH 1 0.14% IDI 1 0.14% HDS/IspG 1 0.14% MDS/IspF 1 0.14% DXR 1 0.14%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 41 14 BAHD (17) View species results
Alkaloid pathway 38 9 NMT (9) View species results
Phenylpropanoid pathway 24 4 POD (16) View species results
Steroid pathway 18 9 CAS (5) View species results
Flavonoid pathway 7 3 IFR (4) View species results
Rosmarinic acid pathway 5 2 CPR (4) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 241 BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 2 47 BAHD, HCT
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status Best Target
Crei01G0001260.1 Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Crei03G0004680.1 Alkaloid TRI/TRII low borderline TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
Crei03G0006810.1 Alkaloid TRI/TRII medium pass TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
Crei03G0010980.1 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Crei07G0000840.1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Crei08G0006200.1 Alkaloid TRI/TRII low borderline TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Crei09G0001980.1 Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Crei09G0002030.1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Crei09G0006670.1 Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Crei11G0004690.1 Alkaloid TRI/TRII low borderline TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
Crei12G0013030.1 Alkaloid TRI/TRII low borderline TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH
Crei12G0013580.1 Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Crei16G0008180.1 Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Crei16G0008900.1 Alkaloid TRI/TRII medium pass TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH
Crei17G0007880.1 Alkaloid TRI/TRII low borderline TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH