Chlamydomonas reinhardtii (chlamydomonas_reinhardtii)
Imported from atlas release summary for Chlamydomonas reinhardtii.
434
Candidate Protein Records
133
Pathway-Level Records
693
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
693
Family-Level Calls
BAHD
6.64%
C4H
6.2%
4CL
5.63%
C3'H/CYP98A
5.48%
STR
4.47%
NMT
4.33%
CYP76
3.61%
IFR
3.32%
Other Families
60.32%
More Families (81)
POD
23
3.32%
CYP71
19
2.74%
DWF4/CYP90B1
18
2.6%
GS
17
2.45%
CNMT
17
2.45%
FNS
17
2.45%
IFS
16
2.31%
T3O
15
2.16%
TRI/TRII
15
2.16%
CAD
14
2.02%
SMT1/SMT2/SMT3
14
2.02%
8HGO
11
1.59%
IO
10
1.44%
CSE
10
1.44%
CPR
10
1.44%
CYP90D1
9
1.3%
ANR
8
1.15%
CYP719
6
0.87%
PYKS
6
0.87%
F3'H/CYP75B
6
0.87%
BR6OX2/CYP85A2
6
0.87%
MPO
5
0.72%
BBE
5
0.72%
SLS
5
0.72%
ODC
5
0.72%
UFGT
5
0.72%
CAS
5
0.72%
16OMT
4
0.58%
7DLGT
4
0.58%
F3'5'H/CYP75A
4
0.58%
CCR
4
0.58%
LAC
4
0.58%
COMT
4
0.58%
CPD/CYP90A1
4
0.58%
SQS/FDFT1
4
0.58%
DET2
4
0.58%
AACT
4
0.58%
MVK
4
0.58%
CYP80F1
3
0.43%
CODM/T6ODM
3
0.43%
COR
3
0.43%
PAL
3
0.43%
F3H
3
0.43%
CYP51G1
3
0.43%
BR6OX1/CYP85A1
3
0.43%
FPPS
3
0.43%
UGT
3
0.43%
GGPPS
3
0.43%
G8O/G8H
2
0.29%
PMT
2
0.29%
H6H
2
0.29%
T16H
2
0.29%
CHI
2
0.29%
DFR
2
0.29%
TAT
2
0.29%
CPI1
2
0.29%
ROT3/CYP90C1
2
0.29%
HYD1
2
0.29%
HMGS
2
0.29%
CMK/IspE
2
0.29%
DXS
2
0.29%
MCT/IspD
2
0.29%
TYDC_DDC
1
0.14%
TDC
1
0.14%
ADC
1
0.14%
CYP80B1
1
0.14%
HCT
1
0.14%
F5H/CYP84A
1
0.14%
CCoAOMT
1
0.14%
HPPR
1
0.14%
FK
1
0.14%
DWF7
1
0.14%
SQE
1
0.14%
SMO1/SMO2
1
0.14%
MVD
1
0.14%
PMK
1
0.14%
HDR/IspH
1
0.14%
IDI
1
0.14%
HDS/IspG
1
0.14%
MDS/IspF
1
0.14%
DXR
1
0.14%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 41 | 14 | BAHD (17) | View species results |
| Alkaloid pathway | 38 | 9 | NMT (9) | View species results |
| Phenylpropanoid pathway | 24 | 4 | POD (16) | View species results |
| Steroid pathway | 18 | 9 | CAS (5) | View species results |
| Flavonoid pathway | 7 | 3 | IFR (4) | View species results |
| Rosmarinic acid pathway | 5 | 2 | CPR (4) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 241 | BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 2 | 47 | BAHD, HCT |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Crei04G0003120.1 | Alkaloid | STR | low | borderline |
| Crei04G0003850.1 | Alkaloid | STR | low | borderline |
| Crei04G0003870.1 | Alkaloid | STR | low | borderline |
| Crei05G0000070.1 | Alkaloid | STR | low | borderline |
| Crei05G0004650.1 | Alkaloid | STR | low | borderline |
| Crei07G0003960.1 | Alkaloid | STR | low | borderline |
| Crei07G0006440.1 | Alkaloid | STR | low | borderline |
| Crei07G0006440.2 | Alkaloid | STR | low | borderline |
| Crei09G0002790.1 | Alkaloid | STR | low | borderline |
| Crei11G0000750.1 | Alkaloid | STR | low | borderline |
| Crei12G0009680.1 | Alkaloid | STR | low | borderline |
| Crei12G0009680.2 | Alkaloid | STR | low | borderline |
| Crei12G0010480.1 | Alkaloid | STR | low | borderline |
| Crei12G0015670.1 | Alkaloid | STR | low | borderline |
| Crei12G0017180.1 | Alkaloid | STR | low | borderline |
| Crei16G0000730.1 | Alkaloid | STR | low | borderline |
| Crei16G0002990.1 | Alkaloid | STR | low | borderline |
| Crei16G0002990.2 | Alkaloid | STR | low | borderline |
| Crei17G0004670.1 | Alkaloid | STR | low | borderline |
| Crei17G0006060.1 | Alkaloid | STR | low | borderline |
| Crei17G0007100.1 | Alkaloid | STR | low | borderline |
| Crei17G0007100.2 | Alkaloid | STR | low | borderline |
| Crei17G0010670.1 | Alkaloid | STR | low | borderline |
| Crei09G0007460.1 | Alkaloid | T16H | medium | borderline |
| Crei11G0001030.1 | Alkaloid | T16H | medium | borderline |
| Crei01G0000940.1 | Alkaloid | T3O | medium | pass |
| Crei01G0001880.1 | Alkaloid | T3O | low | borderline |
| Crei01G0011620.1 | Alkaloid | T3O | medium | pass |
| Crei02G0004330.1 | Alkaloid | T3O | medium | pass |
| Crei07G0009900.1 | Alkaloid | T3O | medium | pass |
| Crei07G0009910.1 | Alkaloid | T3O | medium | pass |
| Crei07G0009920.1 | Alkaloid | T3O | medium | pass |
| Crei07G0010520.1 | Alkaloid | T3O | low | borderline |
| Crei09G0007650.1 | Alkaloid | T3O | medium | pass |
| Crei10G0002020.1 | Alkaloid | T3O | low | borderline |
| Crei10G0002060.1 | Alkaloid | T3O | low | borderline |
| Crei10G0002070.1 | Alkaloid | T3O | low | borderline |
| Crei11G0000060.1 | Alkaloid | T3O | medium | pass |
| Crei11G0002590.1 | Alkaloid | T3O | low | borderline |
| Crei16G0003790.1 | Alkaloid | T3O | low | borderline |
| Crei01G0008290.1 | Alkaloid | TDC | low | borderline |
| Crei01G0001260.1 | Alkaloid | TRI/TRII | low | borderline |
| Crei03G0004680.1 | Alkaloid | TRI/TRII | low | borderline |
| Crei03G0006810.1 | Alkaloid | TRI/TRII | medium | pass |
| Crei03G0010980.1 | Alkaloid | TRI/TRII | medium | pass |
| Crei07G0000840.1 | Alkaloid | TRI/TRII | medium | pass |
| Crei08G0006200.1 | Alkaloid | TRI/TRII | low | borderline |
| Crei09G0001980.1 | Alkaloid | TRI/TRII | low | borderline |
| Crei09G0002030.1 | Alkaloid | TRI/TRII | medium | pass |
| Crei09G0006670.1 | Alkaloid | TRI/TRII | low | borderline |