Chlamydomonas reinhardtii (chlamydomonas_reinhardtii)
Imported from atlas release summary for Chlamydomonas reinhardtii.
133
Candidate Genes
89
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
133
Candidate Genes
BAHD
6.64%
C4H
6.2%
4CL
5.63%
C3'H/CYP98A
5.48%
STR
4.47%
NMT
4.33%
CYP76
3.61%
IFR
3.32%
Other Families
60.32%
More Families (81)
POD
23
3.32%
CYP71
19
2.74%
DWF4/CYP90B1
18
2.6%
GS
17
2.45%
CNMT
17
2.45%
FNS
17
2.45%
IFS
16
2.31%
T3O
15
2.16%
TRI/TRII
15
2.16%
CAD
14
2.02%
SMT1/SMT2/SMT3
14
2.02%
8HGO
11
1.59%
IO
10
1.44%
CSE
10
1.44%
CPR
10
1.44%
CYP90D1
9
1.3%
ANR
8
1.15%
CYP719
6
0.87%
PYKS
6
0.87%
F3'H/CYP75B
6
0.87%
BR6OX2/CYP85A2
6
0.87%
MPO
5
0.72%
BBE
5
0.72%
SLS
5
0.72%
ODC
5
0.72%
UFGT
5
0.72%
CAS
5
0.72%
16OMT
4
0.58%
7DLGT
4
0.58%
F3'5'H/CYP75A
4
0.58%
CCR
4
0.58%
LAC
4
0.58%
COMT
4
0.58%
CPD/CYP90A1
4
0.58%
SQS/FDFT1
4
0.58%
DET2
4
0.58%
AACT
4
0.58%
MVK
4
0.58%
CYP80F1
3
0.43%
CODM/T6ODM
3
0.43%
COR
3
0.43%
PAL
3
0.43%
F3H
3
0.43%
CYP51G1
3
0.43%
BR6OX1/CYP85A1
3
0.43%
FPPS
3
0.43%
UGT
3
0.43%
GGPPS
3
0.43%
G8O/G8H
2
0.29%
PMT
2
0.29%
H6H
2
0.29%
T16H
2
0.29%
CHI
2
0.29%
DFR
2
0.29%
TAT
2
0.29%
CPI1
2
0.29%
ROT3/CYP90C1
2
0.29%
HYD1
2
0.29%
HMGS
2
0.29%
CMK/IspE
2
0.29%
DXS
2
0.29%
MCT/IspD
2
0.29%
TYDC_DDC
1
0.14%
TDC
1
0.14%
ADC
1
0.14%
CYP80B1
1
0.14%
HCT
1
0.14%
F5H/CYP84A
1
0.14%
CCoAOMT
1
0.14%
HPPR
1
0.14%
FK
1
0.14%
DWF7
1
0.14%
SQE
1
0.14%
SMO1/SMO2
1
0.14%
MVD
1
0.14%
PMK
1
0.14%
HDR/IspH
1
0.14%
IDI
1
0.14%
HDS/IspG
1
0.14%
MDS/IspF
1
0.14%
DXR
1
0.14%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 41 | 14 | BAHD (17) | View species results |
| Alkaloid pathway | 38 | 9 | NMT (9) | View species results |
| Phenylpropanoid pathway | 24 | 4 | POD (16) | View species results |
| Steroid pathway | 18 | 9 | CAS (5) | View species results |
| Flavonoid pathway | 7 | 3 | IFR (4) | View species results |
| Rosmarinic acid pathway | 5 | 2 | CPR (4) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 241 | BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 2 | 47 | BAHD, HCT |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Crei11G0004690.1 | Alkaloid | TRI/TRII | low | borderline |
| Crei12G0013030.1 | Alkaloid | TRI/TRII | low | borderline |
| Crei12G0013580.1 | Alkaloid | TRI/TRII | low | borderline |
| Crei16G0008180.1 | Alkaloid | TRI/TRII | low | borderline |
| Crei16G0008900.1 | Alkaloid | TRI/TRII | medium | pass |
| Crei17G0007880.1 | Alkaloid | TRI/TRII | low | borderline |
| Crei01G0006240.1 | Alkaloid | TYDC_DDC | medium | borderline |
| Crei01G0006730.1 | Flavonoid | 4CL | low | borderline |
| Crei01G0011880.1 | Flavonoid | 4CL | low | borderline |
| Crei01G0012520.1 | Flavonoid | 4CL | low | borderline |
| Crei03G0009030.1 | Flavonoid | 4CL | low | borderline |
| Crei03G0015860.1 | Flavonoid | 4CL | low | borderline |
| Crei06G0013180.1 | Flavonoid | 4CL | low | borderline |
| Crei07G0009700.1 | Flavonoid | 4CL | low | borderline |
| Crei10G0006970.1 | Flavonoid | 4CL | low | borderline |
| Crei12G0004040.1 | Flavonoid | 4CL | low | borderline |
| Crei12G0005480.1 | Flavonoid | 4CL | low | borderline |
| Crei13G0001170.1 | Flavonoid | 4CL | low | borderline |
| Crei13G0001170.2 | Flavonoid | 4CL | low | borderline |
| Crei13G0005480.1 | Flavonoid | 4CL | low | borderline |
| Crei07G0002780.1 | Flavonoid | ANR | medium | pass |
| Crei10G0005300.1 | Flavonoid | ANR | low | borderline |
| Crei12G0006160.1 | Flavonoid | ANR | medium | borderline |
| Crei12G0006180.1 | Flavonoid | ANR | medium | borderline |
| Crei12G0006190.1 | Flavonoid | ANR | medium | borderline |
| Crei12G0006200.1 | Flavonoid | ANR | medium | borderline |
| Crei12G0015560.1 | Flavonoid | ANR | medium | borderline |
| Crei13G0001830.1 | Flavonoid | ANR | low | borderline |
| Crei14G0004070.1 | Flavonoid | C4H | low | borderline |
| Crei16G0011750.1 | Flavonoid | C4H | medium | borderline |
| Crei01G0001800.1 | Flavonoid | CHI | medium | pass |
| Crei01G0001800.2 | Flavonoid | CHI | medium | pass |
| Crei01G0004300.1 | Flavonoid | DFR | low | borderline |
| Crei01G0005200.1 | Flavonoid | DFR | medium | borderline |
| Crei01G0008350.1 | Flavonoid | F3'5'H/CYP75A | medium | borderline |
| Crei01G0011620.1 | Flavonoid | F3'5'H/CYP75A | medium | borderline |
| Crei03G0005670.1 | Flavonoid | F3'5'H/CYP75A | low | borderline |
| Crei03G0005670.2 | Flavonoid | F3'5'H/CYP75A | low | borderline |
| Crei01G0000940.1 | Flavonoid | F3'H/CYP75B | low | borderline |
| Crei07G0009920.1 | Flavonoid | F3'H/CYP75B | low | borderline |
| Crei07G0010290.1 | Flavonoid | F3'H/CYP75B | low | borderline |
| Crei08G0006800.1 | Flavonoid | F3'H/CYP75B | low | borderline |
| Crei09G0007480.1 | Flavonoid | F3'H/CYP75B | medium | borderline |
| Crei11G0001030.1 | Flavonoid | F3'H/CYP75B | low | borderline |
| Crei09G0001000.1 | Flavonoid | F3H | low | borderline |
| Crei09G0001000.2 | Flavonoid | F3H | low | borderline |
| Crei10G0010710.1 | Flavonoid | F3H | low | borderline |
| Crei02G0012580.1 | Flavonoid | FNS | medium | borderline |
| Crei03G0004460.1 | Flavonoid | FNS | low | borderline |
| Crei04G0002980.1 | Flavonoid | FNS | medium | borderline |