PlantSME Plant secondary metabolism enzyme database

Cissus rotundifolia (cissus_rotundifolia)

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Imported from atlas release summary for Cissus rotundifolia.

1646
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.56% Alkaloid pathway 21.99% Phenylpropanoid pathway 19.2% Flavonoid pathway 10.21% Rosmarinic acid pathway 8.87% Steroid pathway 7.17%
Family Distribution
C4H 6.8% C3'H/CYP98A 5.69% BAHD 5.67% CYP76 4.46% UGT 4.02% IFS 3.69% 4CL 3.19% 7DLGT 3.02%
Other Families 63.45%
More Families (97)
POD 128 3.02% T3O 115 2.72% F3H 111 2.62% UFGT 106 2.5% TPS 104 2.46% DWF4/CYP90B1 95 2.24% GES 88 2.08% CAS 88 2.08% F3'H/CYP75B 87 2.06% CAD 84 1.98% NMT 82 1.94% BR6OX2/CYP85A2 80 1.89% STR 63 1.49% CODM/T6ODM 62 1.46% HCT 60 1.42% H6H 54 1.28% LAC 54 1.28% TRI/TRII 51 1.2% SMT1/SMT2/SMT3 51 1.2% G8O/G8H 48 1.13% TAT 44 1.04% COMT 43 1.02% T16H 41 0.97% IO 40 0.94% RAS 40 0.94% 16OMT 34 0.8% FNS 34 0.8% IFR 33 0.78% CSE 33 0.78% CPD/CYP90A1 33 0.78% CYP71 31 0.73% PYKS 30 0.71% PAL 30 0.71% GS 29 0.69% F5H/CYP84A 29 0.69% 7DLH 28 0.66% F3'5'H/CYP75A 27 0.64% ANR 26 0.61% CCR 25 0.59% PMT 23 0.54% LAMT 23 0.54% CYP90D1 23 0.54% CYP80B1 22 0.52% SGD 22 0.52% COR 22 0.52% NCS 21 0.5% SLS 18 0.43% DFR 17 0.4% 8HGO 15 0.35% ROT3/CYP90C1 14 0.33% ANS/LDOX 11 0.26% HPPR 11 0.26% BR6OX1/CYP85A1 11 0.26% CYP719 10 0.24% BBE 9 0.21% TYDC_DDC 9 0.21% CYP80F1 9 0.21% PMK 9 0.21% MPO 7 0.17% ISY 7 0.17% CYP51G1 7 0.17% SQS/FDFT1 7 0.17% HMGS 7 0.17% GGPPS 7 0.17% CCoAOMT 6 0.14% DET2 6 0.14% AACT 6 0.14% CNMT 5 0.12% TDC 5 0.12% CHS 5 0.12% FPPS 5 0.12% MVK 5 0.12% ODC 4 0.09% 6OMT_4OMT_SOMT 4 0.09% CHI 4 0.09% CPR 4 0.09% SMO1/SMO2 4 0.09% SQE 4 0.09% MVD 4 0.09% MCT/IspD 4 0.09% DXS 4 0.09% ADC 3 0.07% HYD1 3 0.07% HMGR 3 0.07% XMT_MXMT_DXMT 2 0.05% DWF7 2 0.05% HDR/IspH 2 0.05% FLS 1 0.02% DWF5 1 0.02% CPI1 1 0.02% DWF1 1 0.02% FK 1 0.02% CMK/IspE 1 0.02% MDS/IspF 1 0.02% DXR 1 0.02% IDI 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 536 19 BAHD (186) View species results
Alkaloid pathway 362 24 GES (74) View species results
Phenylpropanoid pathway 316 12 POD (115) View species results
Flavonoid pathway 168 13 UFGT (86) View species results
Rosmarinic acid pathway 146 7 C4H (46) View species results
Steroid pathway 118 12 CAS (64) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1642 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
cissus_rotundifolia_CRGY0229094.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
cissus_rotundifolia_CRGY0229096.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
cissus_rotundifolia_CRGY0230681.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
cissus_rotundifolia_CRGY0230682.1 Phenylpropanoid LAC low borderline LAC__00002__sp_O81081_LAC2_ARATH