PlantSME Plant secondary metabolism enzyme database

Cleistogenes songorica (cleistogenes_songorica)

Imported from atlas release summary for Cleistogenes songorica.

2762
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.34% Phenylpropanoid pathway 23.9% Alkaloid pathway 21.18% Flavonoid pathway 13.94% Rosmarinic acid pathway 8.47% Steroid pathway 5.18%
Family Distribution
C4H 6.54% C3'H/CYP98A 6.3% BAHD 5.71% POD 5.48% UGT 4.37% 7DLGT 4.18% UFGT 3.99% 4CL 3.67%
Other Families 59.76%
More Families (97)
CYP76 242 3.56% T3O 233 3.43% IFS 227 3.34% F3'H/CYP75B 158 2.33% F3H 154 2.27% BR6OX2/CYP85A2 154 2.27% DWF4/CYP90B1 147 2.16% NMT 139 2.05% STR 115 1.69% CYP71 110 1.62% SMT1/SMT2/SMT3 90 1.33% H6H 78 1.15% CODM/T6ODM 70 1.03% CSE 69 1.02% RAS 68 1.0% PYKS 67 0.99% LAC 67 0.99% G8O/G8H 66 0.97% T16H 66 0.97% TRI/TRII 66 0.97% IFR 66 0.97% CCR 66 0.97% PMT 64 0.94% CAD 64 0.94% HCT 64 0.94% SGD 63 0.93% SLS 63 0.93% CYP90D1 61 0.9% FNS 57 0.84% CAS 57 0.84% ANR 53 0.78% COMT 44 0.65% F3'5'H/CYP75A 43 0.63% NCS 42 0.62% TPS 41 0.6% 16OMT 40 0.59% GS 40 0.59% IO 39 0.57% PAL 39 0.57% GES 37 0.54% CPD/CYP90A1 36 0.53% COR 35 0.52% DFR 35 0.52% F5H/CYP84A 35 0.52% BBE 26 0.38% CYP51G1 22 0.32% CHS 21 0.31% BR6OX1/CYP85A1 21 0.31% 8HGO 20 0.29% FPPS 18 0.27% TYDC_DDC 17 0.25% 7DLH 17 0.25% TAT 17 0.25% GGPPS 17 0.25% ANS/LDOX 16 0.24% CPR 14 0.21% CYP80B1 13 0.19% AACT 13 0.19% CNMT 11 0.16% CYP719 11 0.16% CCoAOMT 11 0.16% SMO1/SMO2 11 0.16% ROT3/CYP90C1 11 0.16% MVK 11 0.16% LAMT 10 0.15% CHI 10 0.15% HPPR 10 0.15% SQS/FDFT1 10 0.15% TDC 9 0.13% MPO 9 0.13% DET2 9 0.13% DWF1 8 0.12% XMT_MXMT_DXMT 6 0.09% HYD1 6 0.09% HMGS 6 0.09% HMGR 6 0.09% MVD 6 0.09% DXS 6 0.09% ADC 5 0.07% ISY 5 0.07% CYP80F1 5 0.07% MCT/IspD 5 0.07% PMK 5 0.07% DXR 4 0.06% IDI 4 0.06% 6OMT_4OMT_SOMT 3 0.04% SQE 3 0.04% CMK/IspE 3 0.04% ODC 2 0.03% FLS 2 0.03% DWF5 2 0.03% DWF7 2 0.03% FK 2 0.03% CPI1 2 0.03% HDS/IspG 2 0.03% MDS/IspF 2 0.03% HDR/IspH 2 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 755 19 UGT (273) View species results
Phenylpropanoid pathway 660 11 POD (354) View species results
Alkaloid pathway 585 24 7DLGT (137) View species results
Flavonoid pathway 385 12 UFGT (246) View species results
Rosmarinic acid pathway 234 7 C4H (105) View species results
Steroid pathway 143 12 SMT1/SMT2/SMT3 (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2652 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 520 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
CsonB5G0002410.1 Alkaloid PMT medium pass
CsonB5G0011610.1 Alkaloid PMT low borderline
CsonB5G0024640.1 Alkaloid PMT medium pass
CsonB6G0007290.1 Alkaloid PMT low borderline
CsonB7G0005230.1 Alkaloid PMT medium pass
CsonB7G0005460.1 Alkaloid PMT medium pass
CsonB7G0007880.1 Alkaloid PMT medium pass
CsonB7G0020840.1 Alkaloid PMT low borderline
CsonB8G0004540.1 Alkaloid PMT low borderline
CsonB8G0007740.1 Alkaloid PMT medium pass
CsonB8G0014750.1 Alkaloid PMT medium pass
CsonB8G0018110.1 Alkaloid PMT medium borderline
CsonB8G0018580.1 Alkaloid PMT medium pass
CsonB9G0013250.1 Alkaloid PMT low borderline