Cleistogenes songorica (cleistogenes_songorica)
Imported from atlas release summary for Cleistogenes songorica.
2762
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2762
Candidate Genes
C4H
6.54%
C3'H/CYP98A
6.3%
BAHD
5.71%
POD
5.48%
UGT
4.37%
7DLGT
4.18%
UFGT
3.99%
4CL
3.67%
Other Families
59.76%
More Families (97)
CYP76
242
3.56%
T3O
233
3.43%
IFS
227
3.34%
F3'H/CYP75B
158
2.33%
F3H
154
2.27%
BR6OX2/CYP85A2
154
2.27%
DWF4/CYP90B1
147
2.16%
NMT
139
2.05%
STR
115
1.69%
CYP71
110
1.62%
SMT1/SMT2/SMT3
90
1.33%
H6H
78
1.15%
CODM/T6ODM
70
1.03%
CSE
69
1.02%
RAS
68
1.0%
PYKS
67
0.99%
LAC
67
0.99%
G8O/G8H
66
0.97%
T16H
66
0.97%
TRI/TRII
66
0.97%
IFR
66
0.97%
CCR
66
0.97%
PMT
64
0.94%
CAD
64
0.94%
HCT
64
0.94%
SGD
63
0.93%
SLS
63
0.93%
CYP90D1
61
0.9%
FNS
57
0.84%
CAS
57
0.84%
ANR
53
0.78%
COMT
44
0.65%
F3'5'H/CYP75A
43
0.63%
NCS
42
0.62%
TPS
41
0.6%
16OMT
40
0.59%
GS
40
0.59%
IO
39
0.57%
PAL
39
0.57%
GES
37
0.54%
CPD/CYP90A1
36
0.53%
COR
35
0.52%
DFR
35
0.52%
F5H/CYP84A
35
0.52%
BBE
26
0.38%
CYP51G1
22
0.32%
CHS
21
0.31%
BR6OX1/CYP85A1
21
0.31%
8HGO
20
0.29%
FPPS
18
0.27%
TYDC_DDC
17
0.25%
7DLH
17
0.25%
TAT
17
0.25%
GGPPS
17
0.25%
ANS/LDOX
16
0.24%
CPR
14
0.21%
CYP80B1
13
0.19%
AACT
13
0.19%
CNMT
11
0.16%
CYP719
11
0.16%
CCoAOMT
11
0.16%
SMO1/SMO2
11
0.16%
ROT3/CYP90C1
11
0.16%
MVK
11
0.16%
LAMT
10
0.15%
CHI
10
0.15%
HPPR
10
0.15%
SQS/FDFT1
10
0.15%
TDC
9
0.13%
MPO
9
0.13%
DET2
9
0.13%
DWF1
8
0.12%
XMT_MXMT_DXMT
6
0.09%
HYD1
6
0.09%
HMGS
6
0.09%
HMGR
6
0.09%
MVD
6
0.09%
DXS
6
0.09%
ADC
5
0.07%
ISY
5
0.07%
CYP80F1
5
0.07%
MCT/IspD
5
0.07%
PMK
5
0.07%
DXR
4
0.06%
IDI
4
0.06%
6OMT_4OMT_SOMT
3
0.04%
SQE
3
0.04%
CMK/IspE
3
0.04%
ODC
2
0.03%
FLS
2
0.03%
DWF5
2
0.03%
DWF7
2
0.03%
FK
2
0.03%
CPI1
2
0.03%
HDS/IspG
2
0.03%
MDS/IspF
2
0.03%
HDR/IspH
2
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 755 | 19 | UGT (273) | View species results |
| Phenylpropanoid pathway | 660 | 11 | POD (354) | View species results |
| Alkaloid pathway | 585 | 24 | 7DLGT (137) | View species results |
| Flavonoid pathway | 385 | 12 | UFGT (246) | View species results |
| Rosmarinic acid pathway | 234 | 7 | C4H (105) | View species results |
| Steroid pathway | 143 | 12 | SMT1/SMT2/SMT3 (58) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2652 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 520 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| CsonA10G0006870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA10G0007830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA10G0010230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA10G0010250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA10G0012520.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonA1G0006200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA1G0010850.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA1G0021470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA1G0040230.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonA1G0042610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA2G0005950.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonA2G0008310.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA2G0015980.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA2G0020800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA2G0021240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA2G0021260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA2G0025500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA2G0032300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA3G0017930.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA3G0019270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA3G0020200.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonA3G0020210.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonA3G0027790.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA3G0029450.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA3G0030650.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonA3G0030790.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonA4G0000030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA4G0008120.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonA4G0014490.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonA4G0015870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA4G0016100.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA4G0021720.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonA4G0024920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA4G0025450.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA4G0025460.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA4G0026860.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonA4G0032290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA5G0010860.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA6G0004490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA6G0007420.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA6G0012760.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonA6G0017770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA7G0012190.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA7G0015960.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonA7G0016210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA8G0009090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA9G0011300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA9G0015560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB10G0007720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB10G0009280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |