Cleistogenes songorica (cleistogenes_songorica)
Imported from atlas release summary for Cleistogenes songorica.
3261
Candidate Protein Records
2762
Pathway-Level Records
6792
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
6792
Family-Level Calls
C4H
6.54%
C3'H/CYP98A
6.3%
BAHD
5.71%
POD
5.48%
UGT
4.37%
7DLGT
4.18%
UFGT
3.99%
4CL
3.67%
Other Families
59.76%
More Families (97)
CYP76
242
3.56%
T3O
233
3.43%
IFS
227
3.34%
F3'H/CYP75B
158
2.33%
F3H
154
2.27%
BR6OX2/CYP85A2
154
2.27%
DWF4/CYP90B1
147
2.16%
NMT
139
2.05%
STR
115
1.69%
CYP71
110
1.62%
SMT1/SMT2/SMT3
90
1.33%
H6H
78
1.15%
CODM/T6ODM
70
1.03%
CSE
69
1.02%
RAS
68
1.0%
PYKS
67
0.99%
LAC
67
0.99%
G8O/G8H
66
0.97%
T16H
66
0.97%
TRI/TRII
66
0.97%
IFR
66
0.97%
CCR
66
0.97%
PMT
64
0.94%
CAD
64
0.94%
HCT
64
0.94%
SGD
63
0.93%
SLS
63
0.93%
CYP90D1
61
0.9%
FNS
57
0.84%
CAS
57
0.84%
ANR
53
0.78%
COMT
44
0.65%
F3'5'H/CYP75A
43
0.63%
NCS
42
0.62%
TPS
41
0.6%
16OMT
40
0.59%
GS
40
0.59%
IO
39
0.57%
PAL
39
0.57%
GES
37
0.54%
CPD/CYP90A1
36
0.53%
COR
35
0.52%
DFR
35
0.52%
F5H/CYP84A
35
0.52%
BBE
26
0.38%
CYP51G1
22
0.32%
CHS
21
0.31%
BR6OX1/CYP85A1
21
0.31%
8HGO
20
0.29%
FPPS
18
0.27%
TYDC_DDC
17
0.25%
7DLH
17
0.25%
TAT
17
0.25%
GGPPS
17
0.25%
ANS/LDOX
16
0.24%
CPR
14
0.21%
CYP80B1
13
0.19%
AACT
13
0.19%
CNMT
11
0.16%
CYP719
11
0.16%
CCoAOMT
11
0.16%
SMO1/SMO2
11
0.16%
ROT3/CYP90C1
11
0.16%
MVK
11
0.16%
LAMT
10
0.15%
CHI
10
0.15%
HPPR
10
0.15%
SQS/FDFT1
10
0.15%
TDC
9
0.13%
MPO
9
0.13%
DET2
9
0.13%
DWF1
8
0.12%
XMT_MXMT_DXMT
6
0.09%
HYD1
6
0.09%
HMGS
6
0.09%
HMGR
6
0.09%
MVD
6
0.09%
DXS
6
0.09%
ADC
5
0.07%
ISY
5
0.07%
CYP80F1
5
0.07%
MCT/IspD
5
0.07%
PMK
5
0.07%
DXR
4
0.06%
IDI
4
0.06%
6OMT_4OMT_SOMT
3
0.04%
SQE
3
0.04%
CMK/IspE
3
0.04%
ODC
2
0.03%
FLS
2
0.03%
DWF5
2
0.03%
DWF7
2
0.03%
FK
2
0.03%
CPI1
2
0.03%
HDS/IspG
2
0.03%
MDS/IspF
2
0.03%
HDR/IspH
2
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 755 | 19 | UGT (273) | View species results |
| Phenylpropanoid pathway | 660 | 11 | POD (354) | View species results |
| Alkaloid pathway | 585 | 24 | 7DLGT (137) | View species results |
| Flavonoid pathway | 385 | 12 | UFGT (246) | View species results |
| Rosmarinic acid pathway | 234 | 7 | C4H (105) | View species results |
| Steroid pathway | 143 | 12 | SMT1/SMT2/SMT3 (58) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2652 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 520 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| CsonA4G0032290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA5G0010860.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA6G0004490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA6G0007420.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA6G0012760.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonA6G0017770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA7G0012190.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA7G0015960.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonA7G0016210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA8G0009090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA9G0011300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonA9G0015560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB10G0007720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB10G0009280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB10G0010210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB10G0014840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB1G0005230.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonB1G0010030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB1G0017500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB1G0036500.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonB1G0037180.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonB1G0038690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB2G0000110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB2G0000190.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB2G0000200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB2G0010800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB2G0018570.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB2G0018990.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB2G0019000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB2G0027670.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB2G0030900.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB3G0011600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB3G0012770.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB3G0018540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB3G0019810.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB3G0020660.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonB3G0028280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB3G0028830.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonB3G0030040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB3G0031410.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonB3G0037120.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB3G0037180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB4G0000030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB4G0000040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB4G0007200.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonB4G0013510.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonB4G0014870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB4G0017830.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CsonB4G0020110.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CsonB4G0020300.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |