Coix lacryma-jobi (coix_lacryma_jobi)
Imported from atlas release summary for Coix lacryma-jobi.
2375
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2375
Candidate Genes
BAHD
6.09%
C4H
5.99%
C3'H/CYP98A
4.82%
POD
4.06%
4CL
3.9%
UGT
3.69%
CYP76
3.62%
7DLGT
3.38%
Other Families
64.45%
More Families (96)
UFGT
208
3.3%
T3O
177
2.81%
IFS
171
2.71%
NMT
166
2.63%
F3'H/CYP75B
142
2.25%
DWF4/CYP90B1
127
2.01%
STR
126
2.0%
CAS
125
1.98%
TPS
125
1.98%
F3H
123
1.95%
SMT1/SMT2/SMT3
119
1.89%
CAD
116
1.84%
BR6OX2/CYP85A2
116
1.84%
GES
97
1.54%
G8O/G8H
90
1.43%
SGD
84
1.33%
CYP71
79
1.25%
CCR
69
1.09%
CODM/T6ODM
67
1.06%
FNS
67
1.06%
COR
66
1.05%
H6H
65
1.03%
SLS
58
0.92%
IFR
57
0.9%
F5H/CYP84A
55
0.87%
TRI/TRII
54
0.86%
PAL
54
0.86%
PMT
53
0.84%
RAS
52
0.82%
PYKS
50
0.79%
T16H
48
0.76%
HCT
48
0.76%
LAC
48
0.76%
CSE
48
0.76%
ANR
46
0.73%
DFR
45
0.71%
NCS
40
0.63%
GS
38
0.6%
COMT
37
0.59%
8HGO
36
0.57%
CNMT
36
0.57%
CYP90D1
36
0.57%
CYP51G1
34
0.54%
CPD/CYP90A1
32
0.51%
BR6OX1/CYP85A1
31
0.49%
16OMT
29
0.46%
IO
29
0.46%
ANS/LDOX
28
0.44%
F3'5'H/CYP75A
26
0.41%
CHS
25
0.4%
BBE
21
0.33%
TAT
20
0.32%
MPO
19
0.3%
CYP80B1
19
0.3%
MVK
18
0.29%
AACT
17
0.27%
TYDC_DDC
16
0.25%
CPR
15
0.24%
HPPR
15
0.24%
FLS
14
0.22%
SQS/FDFT1
14
0.22%
CYP719
13
0.21%
ROT3/CYP90C1
13
0.21%
7DLH
12
0.19%
SMO1/SMO2
11
0.17%
FPPS
11
0.17%
XMT_MXMT_DXMT
8
0.13%
CCoAOMT
8
0.13%
MVD
8
0.13%
GGPPS
8
0.13%
DWF1
7
0.11%
MCT/IspD
6
0.1%
ODC
5
0.08%
HMGS
5
0.08%
PMK
5
0.08%
HDR/IspH
5
0.08%
LAMT
4
0.06%
HYD1
4
0.06%
HMGR
4
0.06%
TDC
3
0.05%
CYP80F1
3
0.05%
6OMT_4OMT_SOMT
3
0.05%
DET2
3
0.05%
DWF5
3
0.05%
CPI1
3
0.05%
DXS
3
0.05%
IDI
3
0.05%
ADC
2
0.03%
ISY
2
0.03%
CHI
2
0.03%
SQE
2
0.03%
FK
2
0.03%
DWF7
2
0.03%
CMK/IspE
2
0.03%
DXR
2
0.03%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 704 | 17 | BAHD (256) | View species results |
| Alkaloid pathway | 583 | 23 | 7DLGT (77) | View species results |
| Phenylpropanoid pathway | 417 | 11 | POD (184) | View species results |
| Flavonoid pathway | 299 | 13 | UFGT (182) | View species results |
| Steroid pathway | 196 | 16 | CAS (87) | View species results |
| Rosmarinic acid pathway | 176 | 7 | C4H (67) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2221 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 484 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| coix_lacryma-jobi_GWHPAAYR063101 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| coix_lacryma-jobi_GWHPAAYR063102 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| coix_lacryma-jobi_GWHPAAYR063103 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| coix_lacryma-jobi_GWHPAAYR063104 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| coix_lacryma-jobi_GWHPAAYR063105 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| coix_lacryma-jobi_GWHPAAYR063106 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| coix_lacryma-jobi_GWHPAAYR063107 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| coix_lacryma-jobi_GWHPAAYR064790 | Alkaloid | NMT | low | borderline | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| coix_lacryma-jobi_GWHPAAYR064791 | Alkaloid | NMT | low | borderline | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| coix_lacryma-jobi_GWHPAAYR064792 | Alkaloid | NMT | low | borderline | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| coix_lacryma-jobi_GWHPAAYR066313 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| coix_lacryma-jobi_GWHPAAYR067828 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| coix_lacryma-jobi_GWHPAAYR067829 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| coix_lacryma-jobi_GWHPAAYR068401 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| coix_lacryma-jobi_GWHPAAYR070699 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| coix_lacryma-jobi_GWHPAAYR070700 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |