PlantSME Plant secondary metabolism enzyme database

Coix lacryma-jobi (coix_lacryma_jobi)

Imported from atlas release summary for Coix lacryma-jobi.

2375
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.64% Alkaloid pathway 24.55% Phenylpropanoid pathway 17.56% Flavonoid pathway 12.59% Steroid pathway 8.25% Rosmarinic acid pathway 7.41%
Family Distribution
BAHD 6.09% C4H 5.99% C3'H/CYP98A 4.82% POD 4.06% 4CL 3.9% UGT 3.69% CYP76 3.62% 7DLGT 3.38%
Other Families 64.45%
More Families (96)
UFGT 208 3.3% T3O 177 2.81% IFS 171 2.71% NMT 166 2.63% F3'H/CYP75B 142 2.25% DWF4/CYP90B1 127 2.01% STR 126 2.0% CAS 125 1.98% TPS 125 1.98% F3H 123 1.95% SMT1/SMT2/SMT3 119 1.89% CAD 116 1.84% BR6OX2/CYP85A2 116 1.84% GES 97 1.54% G8O/G8H 90 1.43% SGD 84 1.33% CYP71 79 1.25% CCR 69 1.09% CODM/T6ODM 67 1.06% FNS 67 1.06% COR 66 1.05% H6H 65 1.03% SLS 58 0.92% IFR 57 0.9% F5H/CYP84A 55 0.87% TRI/TRII 54 0.86% PAL 54 0.86% PMT 53 0.84% RAS 52 0.82% PYKS 50 0.79% T16H 48 0.76% HCT 48 0.76% LAC 48 0.76% CSE 48 0.76% ANR 46 0.73% DFR 45 0.71% NCS 40 0.63% GS 38 0.6% COMT 37 0.59% 8HGO 36 0.57% CNMT 36 0.57% CYP90D1 36 0.57% CYP51G1 34 0.54% CPD/CYP90A1 32 0.51% BR6OX1/CYP85A1 31 0.49% 16OMT 29 0.46% IO 29 0.46% ANS/LDOX 28 0.44% F3'5'H/CYP75A 26 0.41% CHS 25 0.4% BBE 21 0.33% TAT 20 0.32% MPO 19 0.3% CYP80B1 19 0.3% MVK 18 0.29% AACT 17 0.27% TYDC_DDC 16 0.25% CPR 15 0.24% HPPR 15 0.24% FLS 14 0.22% SQS/FDFT1 14 0.22% CYP719 13 0.21% ROT3/CYP90C1 13 0.21% 7DLH 12 0.19% SMO1/SMO2 11 0.17% FPPS 11 0.17% XMT_MXMT_DXMT 8 0.13% CCoAOMT 8 0.13% MVD 8 0.13% GGPPS 8 0.13% DWF1 7 0.11% MCT/IspD 6 0.1% ODC 5 0.08% HMGS 5 0.08% PMK 5 0.08% HDR/IspH 5 0.08% LAMT 4 0.06% HYD1 4 0.06% HMGR 4 0.06% TDC 3 0.05% CYP80F1 3 0.05% 6OMT_4OMT_SOMT 3 0.05% DET2 3 0.05% DWF5 3 0.05% CPI1 3 0.05% DXS 3 0.05% IDI 3 0.05% ADC 2 0.03% ISY 2 0.03% CHI 2 0.03% SQE 2 0.03% FK 2 0.03% DWF7 2 0.03% CMK/IspE 2 0.03% DXR 2 0.03% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 704 17 BAHD (256) View species results
Alkaloid pathway 583 23 7DLGT (77) View species results
Phenylpropanoid pathway 417 11 POD (184) View species results
Flavonoid pathway 299 13 UFGT (182) View species results
Steroid pathway 196 16 CAS (87) View species results
Rosmarinic acid pathway 176 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2221 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 484 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ROT3/CYP90C1
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Gene Pathway Family Confidence Status Best Target
coix_lacryma-jobi_GWHPAAYR002359 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
coix_lacryma-jobi_GWHPAAYR008790 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
coix_lacryma-jobi_GWHPAAYR008791 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
coix_lacryma-jobi_GWHPAAYR009343 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
coix_lacryma-jobi_GWHPAAYR009344 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
coix_lacryma-jobi_GWHPAAYR009360 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
coix_lacryma-jobi_GWHPAAYR022397 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
coix_lacryma-jobi_GWHPAAYR029357 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
coix_lacryma-jobi_GWHPAAYR041626 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
coix_lacryma-jobi_GWHPAAYR049207 Steroid ROT3/CYP90C1 low borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
coix_lacryma-jobi_GWHPAAYR049208 Steroid ROT3/CYP90C1 low borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
coix_lacryma-jobi_GWHPAAYR067431 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
coix_lacryma-jobi_GWHPAAYR070684 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH