PlantSME Plant secondary metabolism enzyme database

Cratoneuron filicinum (cratoneuron_filicinum)

Imported from atlas release summary for Cratoneuron filicinum.

684
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.44% Terpenoid pathway 23.98% Alkaloid pathway 20.61% Flavonoid pathway 12.28% Rosmarinic acid pathway 10.38% Steroid pathway 7.31%
Family Distribution
C3'H/CYP98A 5.85% C4H 5.68% POD 5.68% BAHD 5.4% 4CL 4.05% CYP76 3.99% NMT 3.49% IFS 3.09%
Other Families 62.79%
More Families (97)
PAL 48 2.7% STR 47 2.64% F3H 47 2.64% F3'H/CYP75B 45 2.53% IFR 41 2.3% DWF4/CYP90B1 41 2.3% T3O 39 2.19% GS 36 2.02% UGT 35 1.97% PYKS 31 1.74% BR6OX2/CYP85A2 31 1.74% CODM/T6ODM 30 1.69% 7DLGT 25 1.41% CAS 25 1.41% IO 23 1.29% UFGT 23 1.29% CAD 22 1.24% CYP71 22 1.24% COMT 21 1.18% CHS 20 1.12% TRI/TRII 19 1.07% SMT1/SMT2/SMT3 19 1.07% H6H 16 0.9% T16H 14 0.79% 7DLH 14 0.79% CSE 14 0.79% NCS 13 0.73% F3'5'H/CYP75A 13 0.73% LAMT 12 0.67% SLS 12 0.67% CPD/CYP90A1 12 0.67% CYP90D1 12 0.67% 8HGO 11 0.62% COR 11 0.62% RAS 10 0.56% BR6OX1/CYP85A1 10 0.56% ROT3/CYP90C1 10 0.56% SGD 9 0.51% G8O/G8H 9 0.51% CNMT 9 0.51% BBE 9 0.51% CCR 8 0.45% SQS/FDFT1 8 0.45% MVD 8 0.45% PMT 7 0.39% CYP80B1 7 0.39% 16OMT 7 0.39% HCT 7 0.39% GGPPS 7 0.39% 6OMT_4OMT_SOMT 6 0.34% FNS 6 0.34% ANR 6 0.34% DFR 6 0.34% FLS 6 0.34% LAC 6 0.34% CPR 6 0.34% TPS 6 0.34% TDC 5 0.28% F5H/CYP84A 5 0.28% CYP51G1 5 0.28% DET2 5 0.28% AACT 5 0.28% TYDC_DDC 4 0.22% CYP719 4 0.22% CHI 4 0.22% TAT 4 0.22% DWF5 4 0.22% HDS/IspG 4 0.22% FPPS 4 0.22% ADC 3 0.17% GES 3 0.17% XMT_MXMT_DXMT 3 0.17% ANS/LDOX 3 0.17% HDR/IspH 3 0.17% MCT/IspD 3 0.17% MPO 2 0.11% ISY 2 0.11% CCoAOMT 2 0.11% SQE 2 0.11% HYD1 2 0.11% MVK 2 0.11% IDI 2 0.11% CYP80F1 1 0.06% HPPR 1 0.06% CPI1 1 0.06% DWF1 1 0.06% FK 1 0.06% SMO1/SMO2 1 0.06% DWF7 1 0.06% DXR 1 0.06% GPPS 1 0.06% PMK 1 0.06% DXS 1 0.06% CMK/IspE 1 0.06% MDS/IspF 1 0.06% HMGS 1 0.06% HMGR 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 174 10 POD (97) View species results
Terpenoid pathway 164 19 BAHD (62) View species results
Alkaloid pathway 141 19 NMT (28) View species results
Flavonoid pathway 84 10 CHS (19) View species results
Rosmarinic acid pathway 71 7 C4H (29) View species results
Steroid pathway 50 14 CAS (23) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 660 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
Cfil12420017870 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cfil1319210037690 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cfil1329450046060 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cfil16040083090 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cfil17830101010 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cfil19480116880 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cfil20390124410 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cfil2293290145150 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cfil2293300145160 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cfil2340540153400 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cfil2340550153480 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cfil2476420181870 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cfil4840227370 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO