PlantSME Plant secondary metabolism enzyme database

Cucumis melo (cucumis_melo)

Imported from atlas release summary for Cucumis melo.

1224
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.27% Alkaloid pathway 21.57% Phenylpropanoid pathway 19.44% Flavonoid pathway 13.73% Rosmarinic acid pathway 10.54% Steroid pathway 6.45%
Family Distribution
C4H 6.95% C3'H/CYP98A 6.72% BAHD 4.91% CYP76 4.85% IFS 4.45% 4CL 3.71% UGT 3.71% POD 3.51%
Other Families 61.2%
More Families (96)
UFGT 104 3.48% 7DLGT 103 3.44% T3O 97 3.24% DWF4/CYP90B1 77 2.57% NMT 63 2.11% F3H 59 1.97% F3'H/CYP75B 58 1.94% PAL 45 1.5% BR6OX2/CYP85A2 45 1.5% STR 44 1.47% CAS 44 1.47% SMT1/SMT2/SMT3 44 1.47% CAD 43 1.44% TPS 35 1.17% CODM/T6ODM 34 1.14% H6H 33 1.1% T16H 33 1.1% TRI/TRII 33 1.1% GES 31 1.04% IFR 30 1.0% G8O/G8H 29 0.97% F3'5'H/CYP75A 26 0.87% HCT 26 0.87% CSE 25 0.84% CYP71 25 0.84% SGD 24 0.8% COMT 24 0.8% IO 23 0.77% BBE 23 0.77% LAC 23 0.77% SLS 22 0.74% F5H/CYP84A 21 0.7% RAS 21 0.7% TAT 21 0.7% CYP51G1 21 0.7% GS 20 0.67% CYP90D1 20 0.67% FNS 19 0.64% PYKS 18 0.6% 16OMT 18 0.6% PMT 18 0.6% CYP719 17 0.57% CYP80B1 16 0.53% ANR 15 0.5% CCR 15 0.5% CPD/CYP90A1 15 0.5% NCS 14 0.47% 8HGO 14 0.47% BR6OX1/CYP85A1 14 0.47% ROT3/CYP90C1 13 0.43% COR 12 0.4% CNMT 11 0.37% AACT 11 0.37% 7DLH 10 0.33% LAMT 9 0.3% DFR 9 0.3% HPPR 9 0.3% ANS/LDOX 8 0.27% DXS 7 0.23% MPO 6 0.2% FPPS 6 0.2% CPR 5 0.17% SQS/FDFT1 5 0.17% CHS 4 0.13% DET2 4 0.13% MVD 4 0.13% MVK 4 0.13% GGPPS 4 0.13% TYDC_DDC 3 0.1% CHI 3 0.1% CCoAOMT 3 0.1% SQE 3 0.1% HMGR 3 0.1% XMT_MXMT_DXMT 2 0.07% ISY 2 0.07% DWF1 2 0.07% HYD1 2 0.07% SMO1/SMO2 2 0.07% DWF7 2 0.07% HDR/IspH 2 0.07% IDI 2 0.07% PMK 2 0.07% MCT/IspD 2 0.07% 6OMT_4OMT_SOMT 1 0.03% ODC 1 0.03% CYP80F1 1 0.03% ADC 1 0.03% FLS 1 0.03% DWF5 1 0.03% FK 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03% DXR 1 0.03% HMGS 1 0.03% MDS/IspF 1 0.03% HDS/IspG 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 346 19 BAHD (112) View species results
Alkaloid pathway 264 21 7DLGT (62) View species results
Phenylpropanoid pathway 238 12 POD (101) View species results
Flavonoid pathway 168 11 UFGT (101) View species results
Rosmarinic acid pathway 129 7 C4H (56) View species results
Steroid pathway 79 12 CAS (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1270 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 194 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
Cmel00G0001330.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cmel03G0007560.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cmel03G0016530.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cmel04G0006050.1 Alkaloid NCS medium pass NCS__00004__sp_Q4QTJ2_NCS1_PAPSO
Cmel04G0006060.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cmel05G0019360.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cmel06G0020710.1 Alkaloid NCS low borderline NCS__00004__sp_Q4QTJ2_NCS1_PAPSO
Cmel06G0020730.1 Alkaloid NCS medium pass NCS__00004__sp_Q4QTJ2_NCS1_PAPSO
Cmel06G0025450.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cmel11G0005550.1 Alkaloid NCS medium pass NCS__00004__sp_Q4QTJ2_NCS1_PAPSO
Cmel11G0005580.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cmel12G0014720.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cmel12G0020030.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cmel12G0020040.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA