PlantSME Plant secondary metabolism enzyme database

Cucurbita argyrosperma (cucurbita_argyrosperma)

Imported from atlas release summary for Cucurbita argyrosperma.

1198
Candidate Protein Records
814
Pathway-Level Records
2101
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 31.33% Phenylpropanoid pathway 25.06% Alkaloid pathway 19.04% Flavonoid pathway 10.07% Rosmarinic acid pathway 7.25% Steroid pathway 7.25%
Family Distribution
BAHD 7.43% 4CL 5.57% POD 5.43% C4H 5.14% C3'H/CYP98A 4.57% NMT 4.0% IFS 3.47% CYP76 3.43%
Other Families 60.97%
More Families (93)
F3H 58 2.76% UGT 58 2.76% T3O 53 2.52% 7DLGT 52 2.48% UFGT 50 2.38% STR 45 2.14% DWF4/CYP90B1 44 2.09% CODM/T6ODM 41 1.95% SMT1/SMT2/SMT3 39 1.86% IFR 33 1.57% BR6OX2/CYP85A2 31 1.48% CSE 29 1.38% H6H 28 1.33% LAC 27 1.29% CAD 27 1.29% PYKS 26 1.24% F3'H/CYP75B 24 1.14% CAS 22 1.05% GS 20 0.95% CYP71 20 0.95% IO 19 0.9% CCR 19 0.9% TRI/TRII 18 0.86% HCT 18 0.86% TAT 18 0.86% PMT 17 0.81% RAS 17 0.81% NCS 16 0.76% G8O/G8H 16 0.76% ANS/LDOX 16 0.76% CNMT 14 0.67% F3'5'H/CYP75A 14 0.67% ANR 14 0.67% T16H 13 0.62% FNS 13 0.62% CYP90D1 13 0.62% 8HGO 12 0.57% SGD 12 0.57% BR6OX1/CYP85A1 11 0.52% SLS 10 0.48% F5H/CYP84A 10 0.48% BBE 9 0.43% CPR 9 0.43% CPD/CYP90A1 9 0.43% TPS 9 0.43% 7DLH 8 0.38% GES 8 0.38% SQS/FDFT1 8 0.38% MVK 8 0.38% AACT 8 0.38% CYP719 7 0.33% DFR 7 0.33% MVD 7 0.33% FPPS 7 0.33% COR 6 0.29% MPO 6 0.29% CHS 6 0.29% COMT 6 0.29% DET2 6 0.29% SQE 6 0.29% ROT3/CYP90C1 6 0.29% ISY 5 0.24% CCoAOMT 5 0.24% HPPR 5 0.24% CYP51G1 5 0.24% DWF1 5 0.24% GGPPS 5 0.24% DXS 5 0.24% HMGR 5 0.24% TYDC_DDC 4 0.19% CYP80B1 4 0.19% SMO1/SMO2 4 0.19% PMK 4 0.19% LAMT 3 0.14% 16OMT 3 0.14% CHI 3 0.14% CMK/IspE 3 0.14% MCT/IspD 3 0.14% IDI 3 0.14% TDC 2 0.1% ADC 2 0.1% FK 2 0.1% CPI1 2 0.1% DWF7 2 0.1% HYD1 2 0.1% MDS/IspF 2 0.1% HDS/IspG 2 0.1% HDR/IspH 2 0.1% HMGS 2 0.1% ODC 1 0.05% FLS 1 0.05% DWF5 1 0.05% DXR 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 255 19 BAHD (118) View species results
Phenylpropanoid pathway 204 10 POD (104) View species results
Alkaloid pathway 155 19 NMT (39) View species results
Flavonoid pathway 82 7 UFGT (45) View species results
Rosmarinic acid pathway 59 6 4CL (18) View species results
Steroid pathway 59 12 CAS (18) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 666 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 191 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
CargCucurbita_argyrosperma_scaffold_2500250510.1 Alkaloid T3O low borderline
CargCucurbita_argyrosperma_scaffold_4050273390.1 Alkaloid T3O medium pass
CargCucurbita_argyrosperma_scaffold_4100273760.1 Alkaloid T3O medium borderline