PlantSME Plant secondary metabolism enzyme database

Cucurbita moschata (cucurbita_moschata)

Imported from atlas release summary for Cucurbita moschata.

1470
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.41% Phenylpropanoid pathway 20.95% Alkaloid pathway 19.8% Flavonoid pathway 12.52% Rosmarinic acid pathway 10.0% Steroid pathway 6.33%
Family Distribution
C4H 6.59% C3'H/CYP98A 6.37% BAHD 5.59% CYP76 4.33% 4CL 4.11% POD 3.98% IFS 3.63% T3O 3.55%
Other Families 61.84%
More Families (97)
UGT 130 3.5% 7DLGT 121 3.25% UFGT 117 3.15% DWF4/CYP90B1 92 2.47% NMT 90 2.42% F3'H/CYP75B 84 2.26% F3H 82 2.2% BR6OX2/CYP85A2 81 2.18% STR 57 1.53% CAS 56 1.51% CODM/T6ODM 53 1.43% SMT1/SMT2/SMT3 50 1.34% TPS 49 1.32% PAL 48 1.29% CAD 46 1.24% CYP71 46 1.24% GES 42 1.13% TRI/TRII 38 1.02% HCT 38 1.02% H6H 36 0.97% T16H 36 0.97% IFR 35 0.94% F3'5'H/CYP75A 33 0.89% COMT 33 0.89% LAC 32 0.86% G8O/G8H 31 0.83% CSE 31 0.83% CYP90D1 30 0.81% SLS 29 0.78% SGD 28 0.75% PYKS 28 0.75% 16OMT 28 0.75% TAT 28 0.75% IO 25 0.67% F5H/CYP84A 25 0.67% GS 23 0.62% PMT 23 0.62% CYP51G1 23 0.62% BBE 22 0.59% RAS 22 0.59% FNS 20 0.54% NCS 18 0.48% CCR 17 0.46% 8HGO 16 0.43% 7DLH 15 0.4% CNMT 14 0.38% ANR 14 0.38% ANS/LDOX 14 0.38% BR6OX1/CYP85A1 13 0.35% CPD/CYP90A1 13 0.35% ROT3/CYP90C1 12 0.32% DFR 11 0.3% LAMT 9 0.24% CHS 9 0.24% CPR 9 0.24% SQS/FDFT1 9 0.24% AACT 9 0.24% CYP719 8 0.22% CCoAOMT 8 0.22% FPPS 8 0.22% MPO 7 0.19% CYP80B1 7 0.19% COR 7 0.19% HPPR 7 0.19% SQE 7 0.19% DET2 6 0.16% MVK 6 0.16% MVD 5 0.13% HMGR 5 0.13% GGPPS 5 0.13% DXS 5 0.13% ISY 4 0.11% SMO1/SMO2 4 0.11% CMK/IspE 4 0.11% MCT/IspD 4 0.11% PMK 4 0.11% IDI 4 0.11% HDR/IspH 4 0.11% TYDC_DDC 3 0.08% CHI 3 0.08% DWF1 3 0.08% CPI1 3 0.08% ADC 2 0.05% XMT_MXMT_DXMT 2 0.05% TDC 2 0.05% ODC 2 0.05% FLS 2 0.05% DWF7 2 0.05% FK 2 0.05% HDS/IspG 2 0.05% MDS/IspF 2 0.05% HMGS 2 0.05% DXR 2 0.05% CYP80F1 1 0.03% 6OMT_4OMT_SOMT 1 0.03% DWF5 1 0.03% HYD1 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 447 19 BAHD (156) View species results
Phenylpropanoid pathway 308 11 POD (137) View species results
Alkaloid pathway 291 23 7DLGT (54) View species results
Flavonoid pathway 184 9 UFGT (111) View species results
Rosmarinic acid pathway 147 7 C4H (58) View species results
Steroid pathway 93 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1514 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 268 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status
Cmos03G0004220.1 Alkaloid COR medium pass
Cmos04G0000240.1 Alkaloid COR medium pass
Cmos06G0001960.1 Alkaloid COR low borderline
Cmos07G0010570.1 Alkaloid COR medium pass
Cmos11G0015850.1 Alkaloid COR low borderline
Cmos16G0002160.1 Alkaloid COR medium pass
Cmos19G0007080.1 Alkaloid COR medium pass