PlantSME Plant secondary metabolism enzyme database

Dalbergia odorifera (dalbergia_odorifera)

Imported from atlas release summary for Dalbergia odorifera.

1573
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.24% Phenylpropanoid pathway 21.87% Alkaloid pathway 21.36% Flavonoid pathway 13.41% Rosmarinic acid pathway 8.2% Steroid pathway 5.91%
Family Distribution
BAHD 6.55% C4H 5.35% C3'H/CYP98A 5.13% POD 4.52% UGT 4.38% 4CL 4.1% UFGT 3.9% 7DLGT 3.82%
Other Families 62.25%
More Families (97)
F3H 130 3.62% IFS 117 3.26% CYP76 110 3.07% T3O 104 2.9% NMT 91 2.54% CODM/T6ODM 87 2.43% DWF4/CYP90B1 67 1.87% STR 62 1.73% LAC 60 1.67% F3'H/CYP75B 59 1.64% CAD 56 1.56% SMT1/SMT2/SMT3 56 1.56% H6H 54 1.51% BR6OX2/CYP85A2 49 1.37% HCT 45 1.25% TRI/TRII 42 1.17% CAS 39 1.09% PMT 37 1.03% GS 37 1.03% PYKS 35 0.98% SGD 34 0.95% RAS 34 0.95% CYP71 34 0.95% IFR 33 0.92% COMT 32 0.89% CYP90D1 32 0.89% TPS 29 0.81% G8O/G8H 27 0.75% GES 26 0.72% SLS 26 0.72% CSE 26 0.72% TAT 24 0.67% BR6OX1/CYP85A1 23 0.64% IO 22 0.61% CPD/CYP90A1 21 0.59% T16H 20 0.56% CCR 20 0.56% FNS 19 0.53% ANR 19 0.53% 8HGO 18 0.5% PAL 18 0.5% 7DLH 16 0.45% F3'5'H/CYP75A 16 0.45% COR 15 0.42% DFR 15 0.42% F5H/CYP84A 15 0.42% ANS/LDOX 14 0.39% CCoAOMT 14 0.39% MPO 13 0.36% 16OMT 13 0.36% CHS 13 0.36% CYP51G1 13 0.36% NCS 12 0.33% BBE 11 0.31% DXS 11 0.31% CYP719 9 0.25% GGPPS 9 0.25% AACT 9 0.25% CNMT 8 0.22% HPPR 8 0.22% ROT3/CYP90C1 8 0.22% SQS/FDFT1 8 0.22% LAMT 7 0.2% CPR 7 0.2% DET2 7 0.2% TYDC_DDC 5 0.14% CYP80B1 5 0.14% MVK 5 0.14% FPPS 5 0.14% ISY 4 0.11% TDC 4 0.11% CHI 4 0.11% SMO1/SMO2 4 0.11% HYD1 4 0.11% HDS/IspG 4 0.11% DXR 4 0.11% MVD 4 0.11% XMT_MXMT_DXMT 3 0.08% ADC 3 0.08% SQE 3 0.08% CPI1 3 0.08% HMGS 3 0.08% HMGR 3 0.08% 6OMT_4OMT_SOMT 2 0.06% FLS 2 0.06% CMK/IspE 2 0.06% PMK 2 0.06% ODC 1 0.03% CYP80F1 1 0.03% DWF5 1 0.03% DWF1 1 0.03% FK 1 0.03% DWF7 1 0.03% MDS/IspF 1 0.03% MCT/IspD 1 0.03% HDR/IspH 1 0.03% IDI 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 460 20 BAHD (191) View species results
Phenylpropanoid pathway 344 11 POD (154) View species results
Alkaloid pathway 336 20 NMT (58) View species results
Flavonoid pathway 211 13 UFGT (130) View species results
Rosmarinic acid pathway 129 7 C4H (38) View species results
Steroid pathway 93 14 SMT1/SMT2/SMT3 (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1170 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 314 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHI
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Gene Pathway Family Confidence Status Best Target
dalbergia_odorifera_evm.model.scaffold_36.317 Flavonoid CHI medium pass CHI__00001__sp_A0A2U7XUE3_CHIL2_HUMLU
dalbergia_odorifera_evm.model.scaffold_375.206 Flavonoid CHI medium pass CHI__00009__sp_Q53B70_CF1B2_SOYBN
dalbergia_odorifera_evm.model.scaffold_375.207 Flavonoid CHI medium pass CHI__00012__sp_Q8H0G1_CFI2_LOTJA
dalbergia_odorifera_evm.model.scaffold_375.210 Flavonoid CHI low borderline CHI__00012__sp_Q8H0G1_CFI2_LOTJA