PlantSME Plant secondary metabolism enzyme database

Dendrobium chrysotoxum (dendrobium_chrysotoxum)

Imported from atlas release summary for Dendrobium chrysotoxum.

1036
Candidate Genes
98
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.32% Alkaloid pathway 21.14% Phenylpropanoid pathway 19.21% Flavonoid pathway 16.02% Rosmarinic acid pathway 11.68% Steroid pathway 4.63%
Family Distribution
C4H 7.24% C3'H/CYP98A 6.58% 4CL 4.88% BAHD 4.52% IFS 4.34% T3O 4.05% UGT 3.94% CYP76 3.8%
Other Families 60.64%
More Families (90)
7DLGT 100 3.62% UFGT 99 3.58% POD 86 3.11% DWF4/CYP90B1 80 2.89% CYP71 76 2.75% F3H 65 2.35% F3'H/CYP75B 63 2.28% NMT 53 1.92% BR6OX2/CYP85A2 53 1.92% STR 50 1.81% TPS 40 1.45% CAD 39 1.41% G8O/G8H 37 1.34% CODM/T6ODM 37 1.34% GES 37 1.34% CYP90D1 34 1.23% SMT1/SMT2/SMT3 33 1.19% T16H 32 1.16% CAS 32 1.16% IFR 30 1.09% CSE 30 1.09% H6H 27 0.98% TRI/TRII 26 0.94% PYKS 24 0.87% SLS 23 0.83% RAS 23 0.83% COMT 20 0.72% GS 18 0.65% LAC 18 0.65% NCS 17 0.62% F5H/CYP84A 17 0.62% IO 16 0.58% SGD 15 0.54% FNS 15 0.54% PAL 15 0.54% HCT 15 0.54% ANR 14 0.51% F3'5'H/CYP75A 14 0.51% CCR 14 0.51% CYP51G1 14 0.51% DFR 12 0.43% ROT3/CYP90C1 12 0.43% 8HGO 11 0.4% PMT 11 0.4% 16OMT 10 0.36% BR6OX1/CYP85A1 10 0.36% MPO 9 0.33% CHS 9 0.33% TAT 9 0.33% 7DLH 8 0.29% ANS/LDOX 8 0.29% BBE 7 0.25% CCoAOMT 7 0.25% CPR 6 0.22% CPD/CYP90A1 6 0.22% GGPPS 6 0.22% CYP80B1 5 0.18% SQS/FDFT1 5 0.18% DXS 5 0.18% MVK 5 0.18% CYP719 4 0.14% ISY 4 0.14% DET2 4 0.14% AACT 4 0.14% CNMT 3 0.11% COR 3 0.11% TDC 3 0.11% LAMT 3 0.11% CHI 3 0.11% HPPR 3 0.11% SQE 3 0.11% 6OMT_4OMT_SOMT 2 0.07% CYP80F1 2 0.07% TYDC_DDC 2 0.07% SMO1/SMO2 2 0.07% IDI 2 0.07% CMK/IspE 2 0.07% MCT/IspD 2 0.07% MVD 2 0.07% XMT_MXMT_DXMT 1 0.04% ADC 1 0.04% CPI1 1 0.04% DWF7 1 0.04% DWF1 1 0.04% DWF5 1 0.04% HMGS 1 0.04% MDS/IspF 1 0.04% FPPS 1 0.04% HDR/IspH 1 0.04% DXR 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 283 14 UGT (97) View species results
Alkaloid pathway 219 18 7DLGT (43) View species results
Phenylpropanoid pathway 199 11 POD (71) View species results
Flavonoid pathway 166 10 UFGT (96) View species results
Rosmarinic acid pathway 121 7 C4H (56) View species results
Steroid pathway 48 10 CAS (19) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1225 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 163 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
Reset
Gene Pathway Family Confidence Status Best Target
KAH0433807.1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
KAH0450182.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
KAH0450655.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
KAH0450658.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
KAH0450861.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
KAH0451107.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
KAH0451109.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
KAH0456174.1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
KAH0458511.1 Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
KAH0461343.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
KAH0462206.1 Phenylpropanoid CCR low borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
KAH0462574.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
KAH0464604.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
KAH0467609.1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ