PlantSME Plant secondary metabolism enzyme database

Dendrobium huoshanense (dendrobium_huoshanense)

Imported from atlas release summary for Dendrobium huoshanense.

916
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 25.22% Alkaloid pathway 22.49% Phenylpropanoid pathway 22.05% Flavonoid pathway 14.08% Rosmarinic acid pathway 10.26% Steroid pathway 5.9%
Family Distribution
C4H 7.51% C3'H/CYP98A 6.68% 4CL 5.1% T3O 4.54% BAHD 4.27% IFS 4.07% POD 3.32% CYP76 3.2%
Other Families 61.32%
More Families (94)
CYP71 79 3.12% DWF4/CYP90B1 78 3.08% UGT 75 2.96% UFGT 72 2.84% 7DLGT 71 2.81% F3'H/CYP75B 71 2.81% F3H 61 2.41% NMT 57 2.25% STR 54 2.13% CAD 47 1.86% BR6OX2/CYP85A2 47 1.86% CODM/T6ODM 42 1.66% SMT1/SMT2/SMT3 35 1.38% CAS 32 1.26% TPS 31 1.22% GES 30 1.19% H6H 29 1.15% IFR 29 1.15% CYP90D1 28 1.11% SLS 25 0.99% T16H 25 0.99% CSE 25 0.99% LAC 24 0.95% PYKS 23 0.91% GS 20 0.79% 8HGO 20 0.79% TRI/TRII 20 0.79% SGD 19 0.75% G8O/G8H 18 0.71% ANS/LDOX 17 0.67% F5H/CYP84A 16 0.63% CYP51G1 16 0.63% FNS 15 0.59% CCR 14 0.55% RAS 13 0.51% IO 12 0.47% NCS 12 0.47% DFR 12 0.47% PAL 12 0.47% COMT 12 0.47% ANR 11 0.43% HCT 10 0.4% ROT3/CYP90C1 9 0.36% BR6OX1/CYP85A1 9 0.36% 16OMT 8 0.32% PMT 8 0.32% F3'5'H/CYP75A 8 0.32% COR 7 0.28% BBE 7 0.28% MPO 7 0.28% CPD/CYP90A1 7 0.28% TYDC_DDC 6 0.24% CYP80B1 6 0.24% CNMT 6 0.24% CHS 6 0.24% CCoAOMT 6 0.24% TAT 6 0.24% SQS/FDFT1 6 0.24% CPR 5 0.2% DET2 5 0.2% IDI 5 0.2% GGPPS 5 0.2% DWF1 4 0.16% MVK 4 0.16% 7DLH 3 0.12% LAMT 3 0.12% CYP719 3 0.12% SQE 3 0.12% HMGR 3 0.12% DXS 3 0.12% MVD 3 0.12% FPPS 3 0.12% HDS/IspG 3 0.12% ADC 2 0.08% 6OMT_4OMT_SOMT 2 0.08% SMO1/SMO2 2 0.08% AACT 2 0.08% MCT/IspD 2 0.08% TDC 1 0.04% XMT_MXMT_DXMT 1 0.04% ISY 1 0.04% CHI 1 0.04% HPPR 1 0.04% DWF5 1 0.04% DWF7 1 0.04% FK 1 0.04% CPI1 1 0.04% HYD1 1 0.04% PMK 1 0.04% GPPS 1 0.04% DXR 1 0.04% CMK/IspE 1 0.04% MDS/IspF 1 0.04% HDR/IspH 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 231 17 UGT (72) View species results
Alkaloid pathway 206 18 NMT (40) View species results
Phenylpropanoid pathway 202 11 POD (72) View species results
Flavonoid pathway 129 9 UFGT (68) View species results
Rosmarinic acid pathway 94 7 C4H (42) View species results
Steroid pathway 54 13 CAS (18) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1118 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 131 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status Best Target
Dhuo02G0002800 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
Dhuo02G0002810 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
Dhuo02G0002820 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
Dhuo07G0007480 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Dhuo07G0007490 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Dhuo17G0017500 Alkaloid COR low borderline COR__00004__sp_Q9SQ69_COR12_PAPSO
DhuoScaffold9760004460 Alkaloid COR low borderline COR__00002__sp_Q9SQ67_COR14_PAPSO