Dendrobium huoshanense (dendrobium_huoshanense)
Imported from atlas release summary for Dendrobium huoshanense.
916
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
916
Candidate Genes
C4H
7.51%
C3'H/CYP98A
6.68%
4CL
5.1%
T3O
4.54%
BAHD
4.27%
IFS
4.07%
POD
3.32%
CYP76
3.2%
Other Families
61.32%
More Families (94)
CYP71
79
3.12%
DWF4/CYP90B1
78
3.08%
UGT
75
2.96%
UFGT
72
2.84%
7DLGT
71
2.81%
F3'H/CYP75B
71
2.81%
F3H
61
2.41%
NMT
57
2.25%
STR
54
2.13%
CAD
47
1.86%
BR6OX2/CYP85A2
47
1.86%
CODM/T6ODM
42
1.66%
SMT1/SMT2/SMT3
35
1.38%
CAS
32
1.26%
TPS
31
1.22%
GES
30
1.19%
H6H
29
1.15%
IFR
29
1.15%
CYP90D1
28
1.11%
SLS
25
0.99%
T16H
25
0.99%
CSE
25
0.99%
LAC
24
0.95%
PYKS
23
0.91%
GS
20
0.79%
8HGO
20
0.79%
TRI/TRII
20
0.79%
SGD
19
0.75%
G8O/G8H
18
0.71%
ANS/LDOX
17
0.67%
F5H/CYP84A
16
0.63%
CYP51G1
16
0.63%
FNS
15
0.59%
CCR
14
0.55%
RAS
13
0.51%
IO
12
0.47%
NCS
12
0.47%
DFR
12
0.47%
PAL
12
0.47%
COMT
12
0.47%
ANR
11
0.43%
HCT
10
0.4%
ROT3/CYP90C1
9
0.36%
BR6OX1/CYP85A1
9
0.36%
16OMT
8
0.32%
PMT
8
0.32%
F3'5'H/CYP75A
8
0.32%
COR
7
0.28%
BBE
7
0.28%
MPO
7
0.28%
CPD/CYP90A1
7
0.28%
TYDC_DDC
6
0.24%
CYP80B1
6
0.24%
CNMT
6
0.24%
CHS
6
0.24%
CCoAOMT
6
0.24%
TAT
6
0.24%
SQS/FDFT1
6
0.24%
CPR
5
0.2%
DET2
5
0.2%
IDI
5
0.2%
GGPPS
5
0.2%
DWF1
4
0.16%
MVK
4
0.16%
7DLH
3
0.12%
LAMT
3
0.12%
CYP719
3
0.12%
SQE
3
0.12%
HMGR
3
0.12%
DXS
3
0.12%
MVD
3
0.12%
FPPS
3
0.12%
HDS/IspG
3
0.12%
ADC
2
0.08%
6OMT_4OMT_SOMT
2
0.08%
SMO1/SMO2
2
0.08%
AACT
2
0.08%
MCT/IspD
2
0.08%
TDC
1
0.04%
XMT_MXMT_DXMT
1
0.04%
ISY
1
0.04%
CHI
1
0.04%
HPPR
1
0.04%
DWF5
1
0.04%
DWF7
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
HYD1
1
0.04%
PMK
1
0.04%
GPPS
1
0.04%
DXR
1
0.04%
CMK/IspE
1
0.04%
MDS/IspF
1
0.04%
HDR/IspH
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 231 | 17 | UGT (72) | View species results |
| Alkaloid pathway | 206 | 18 | NMT (40) | View species results |
| Phenylpropanoid pathway | 202 | 11 | POD (72) | View species results |
| Flavonoid pathway | 129 | 9 | UFGT (68) | View species results |
| Rosmarinic acid pathway | 94 | 7 | C4H (42) | View species results |
| Steroid pathway | 54 | 13 | CAS (18) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1118 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 131 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Dhuo04G0005530 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Dhuo04G0005560 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Dhuo05G0002800 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Dhuo06G0009190 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Dhuo06G0009220 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Dhuo06G0015340 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Dhuo06G0015350 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Dhuo07G0000810 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Dhuo07G0006420 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Dhuo08G0004030 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Dhuo09G0000640 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Dhuo09G0004630 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Dhuo10G0009530 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Dhuo13G0002690 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Dhuo13G0003110 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Dhuo13G0006240 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Dhuo16G0002380 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Dhuo16G0008910 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Dhuo16G0008990 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Dhuo17G0002100 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Dhuo17G0010750 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Dhuo17G0015350 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Dhuo17G0015410 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Dhuo18G0004340 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Dhuo18G0004390 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Dhuo18G0015210 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| DhuoScaffold11790000420 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Dhuo11G0005200 | Steroid | SQE | medium | pass |
| Dhuo14G0000800 | Steroid | SQE | medium | pass |
| Dhuo14G0000870 | Steroid | SQE | medium | pass |
| Dhuo04G0005620 | Steroid | SQS/FDFT1 | low | borderline |
| Dhuo04G0005680 | Steroid | SQS/FDFT1 | low | borderline |
| Dhuo06G0003930 | Steroid | SQS/FDFT1 | medium | pass |
| Dhuo14G0000240 | Steroid | SQS/FDFT1 | low | borderline |
| Dhuo17G0017510 | Steroid | SQS/FDFT1 | medium | pass |
| DhuoScaffold21050002470 | Steroid | SQS/FDFT1 | medium | pass |