PlantSME Plant secondary metabolism enzyme database

Distichophyllum collenchymatosum (distichophyllum_collenchymatosum)

Imported from atlas release summary for Distichophyllum collenchymatosum.

551
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.95% Terpenoid pathway 20.33% Alkaloid pathway 20.15% Flavonoid pathway 14.16% Rosmarinic acid pathway 11.07% Steroid pathway 6.35%
Family Distribution
POD 6.47% BAHD 6.39% C4H 5.05% PAL 4.97% C3'H/CYP98A 4.89% 4CL 4.73% NMT 4.34% CYP76 3.55%
Other Families 59.62%
More Families (93)
PYKS 37 2.92% STR 36 2.84% IFS 35 2.76% T3O 30 2.37% GS 30 2.37% IFR 30 2.37% F3'H/CYP75B 29 2.29% DWF4/CYP90B1 29 2.29% CHS 28 2.21% CAD 23 1.81% F3H 22 1.74% BR6OX2/CYP85A2 22 1.74% CODM/T6ODM 18 1.42% SMT1/SMT2/SMT3 15 1.18% UFGT 14 1.1% HCT 14 1.1% CYP71 14 1.1% UGT 14 1.1% IO 13 1.03% CAS 13 1.03% 7DLGT 12 0.95% TRI/TRII 11 0.87% CSE 11 0.87% LAC 10 0.79% T16H 9 0.71% G8O/G8H 9 0.71% COMT 9 0.71% RAS 9 0.71% H6H 8 0.63% ANR 8 0.63% CYP90D1 8 0.63% 7DLH 7 0.55% CNMT 6 0.47% COR 6 0.47% TAT 6 0.47% CPR 6 0.47% CPD/CYP90A1 6 0.47% TPS 6 0.47% 8HGO 5 0.39% BBE 5 0.39% PMT 5 0.39% LAMT 5 0.39% SGD 5 0.39% SLS 5 0.39% GES 5 0.39% SQS/FDFT1 5 0.39% GGPPS 5 0.39% TDC 4 0.32% F3'5'H/CYP75A 4 0.32% CCR 4 0.32% DET2 4 0.32% DWF5 4 0.32% HYD1 4 0.32% AACT 4 0.32% NCS 3 0.24% CHI 3 0.24% DFR 3 0.24% CCoAOMT 3 0.24% F5H/CYP84A 3 0.24% SMO1/SMO2 3 0.24% ROT3/CYP90C1 3 0.24% SQE 3 0.24% 16OMT 2 0.16% TYDC_DDC 2 0.16% CYP80B1 2 0.16% ADC 2 0.16% ANS/LDOX 2 0.16% FLS 2 0.16% FNS 2 0.16% BR6OX1/CYP85A1 2 0.16% FK 2 0.16% CYP51G1 2 0.16% MVD 2 0.16% FPPS 2 0.16% MCT/IspD 2 0.16% IDI 2 0.16% MVK 2 0.16% CYP80F1 1 0.08% 6OMT_4OMT_SOMT 1 0.08% ISY 1 0.08% MPO 1 0.08% CPI1 1 0.08% DWF1 1 0.08% DWF7 1 0.08% HDS/IspG 1 0.08% PMK 1 0.08% HMGS 1 0.08% GPPS 1 0.08% DXS 1 0.08% HMGR 1 0.08% MDS/IspF 1 0.08% DXR 1 0.08% CMK/IspE 1 0.08%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 154 11 POD (79) View species results
Terpenoid pathway 112 18 BAHD (51) View species results
Alkaloid pathway 111 18 PYKS (27) View species results
Flavonoid pathway 78 8 CHS (27) View species results
Rosmarinic acid pathway 61 6 PAL (21) View species results
Steroid pathway 35 12 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 404 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 104 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
Dcolcontig_2040106750 Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Dcolcontig_300127260 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Dcolcontig_300132020 Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Dcolcontig_310140370 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Dcolcontig_570166140 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Dcolcontig_630175030 Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Dcolcontig_890201740 Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Dcolcontig_890203670 Rosmarinic Acid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Dcolcontig_940219950 Rosmarinic Acid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Dcolcontig_960226290 Rosmarinic Acid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY