PlantSME Plant secondary metabolism enzyme database

Engelhardia roxburghiana (engelhardia_roxburghiana)

Imported from atlas release summary for Engelhardia roxburghiana.

1576
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.0% Alkaloid pathway 22.21% Phenylpropanoid pathway 21.89% Flavonoid pathway 11.8% Rosmarinic acid pathway 8.19% Steroid pathway 6.92%
Family Distribution
C4H 6.2% BAHD 5.69% C3'H/CYP98A 5.62% POD 4.11% IFS 3.98% CYP76 3.95% 4CL 3.88% UGT 3.37%
Other Families 63.2%
More Families (97)
T3O 127 3.35% 7DLGT 116 3.06% F3H 115 3.03% UFGT 112 2.95% DWF4/CYP90B1 86 2.27% NMT 78 2.06% CODM/T6ODM 78 2.06% BR6OX2/CYP85A2 78 2.06% STR 74 1.95% CAD 72 1.9% F3'H/CYP75B 62 1.63% H6H 58 1.53% CAS 56 1.48% SMT1/SMT2/SMT3 55 1.45% LAC 52 1.37% TRI/TRII 48 1.27% CYP71 47 1.24% TPS 43 1.13% HCT 42 1.11% GS 39 1.03% GES 38 1.0% PMT 38 1.0% IFR 35 0.92% PYKS 34 0.9% CYP90D1 34 0.9% CSE 33 0.87% T16H 32 0.84% SGD 30 0.79% G8O/G8H 29 0.76% IO 29 0.76% FNS 26 0.69% RAS 26 0.69% ANR 24 0.63% COMT 24 0.63% TAT 24 0.63% LAMT 22 0.58% F5H/CYP84A 22 0.58% CPD/CYP90A1 21 0.55% 7DLH 19 0.5% BBE 19 0.5% 16OMT 18 0.47% ANS/LDOX 18 0.47% 8HGO 16 0.42% CCR 16 0.42% F3'5'H/CYP75A 15 0.4% PAL 15 0.4% COR 14 0.37% SLS 13 0.34% BR6OX1/CYP85A1 13 0.34% FPPS 13 0.34% CNMT 12 0.32% CHS 12 0.32% DFR 12 0.32% ROT3/CYP90C1 11 0.29% NCS 10 0.26% GGPPS 10 0.26% ISY 9 0.24% MPO 9 0.24% CPR 9 0.24% CYP80B1 8 0.21% SQS/FDFT1 8 0.21% AACT 8 0.21% HDR/IspH 8 0.21% CCoAOMT 7 0.18% HPPR 7 0.18% SQE 7 0.18% DXS 7 0.18% MVK 7 0.18% MVD 7 0.18% TDC 6 0.16% CYP719 6 0.16% CYP51G1 6 0.16% DET2 6 0.16% ADC 5 0.13% CPI1 5 0.13% TYDC_DDC 4 0.11% SMO1/SMO2 4 0.11% HMGS 4 0.11% XMT_MXMT_DXMT 3 0.08% CHI 3 0.08% HMGR 3 0.08% ODC 2 0.05% CYP80F1 2 0.05% DWF7 2 0.05% HYD1 2 0.05% DWF1 2 0.05% IDI 2 0.05% MDS/IspF 2 0.05% PMK 2 0.05% DXR 2 0.05% HDS/IspG 2 0.05% FLS 1 0.03% DWF5 1 0.03% FK 1 0.03% GPPS 1 0.03% CMK/IspE 1 0.03% MCT/IspD 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 BAHD (179) View species results
Alkaloid pathway 350 23 7DLGT (53) View species results
Phenylpropanoid pathway 345 12 POD (142) View species results
Flavonoid pathway 186 10 UFGT (108) View species results
Rosmarinic acid pathway 129 7 C4H (56) View species results
Steroid pathway 109 13 CAS (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1409 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 284 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status Best Target
engelhardia_roxburghiana_AroxChr01G001818.1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
engelhardia_roxburghiana_AroxChr04G000272.1 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
engelhardia_roxburghiana_AroxChr04G000273.1 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
engelhardia_roxburghiana_AroxChr04G000274.1 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
engelhardia_roxburghiana_AroxChr04G000275.1 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
engelhardia_roxburghiana_AroxChr05G000662.1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
engelhardia_roxburghiana_AroxChr05G001412.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
engelhardia_roxburghiana_AroxChr05G001465.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
engelhardia_roxburghiana_AroxChr07G000598.1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
engelhardia_roxburghiana_AroxChr09G000163.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
engelhardia_roxburghiana_AroxChr11G000802.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
engelhardia_roxburghiana_AroxChr11G000803.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
engelhardia_roxburghiana_AroxChr11G001176.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
engelhardia_roxburghiana_AroxChr13G000658.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO