PlantSME Plant secondary metabolism enzyme database

Erigeron breviscapus (erigeron_breviscapus)

Imported from atlas release summary for Erigeron breviscapus.

1899
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 33.6% Phenylpropanoid pathway 22.33% Alkaloid pathway 21.96% Flavonoid pathway 8.58% Rosmarinic acid pathway 7.27% Steroid pathway 6.27%
Family Distribution
C4H 7.62% C3'H/CYP98A 6.81% BAHD 5.86% CYP76 4.43% IFS 4.08% POD 4.0% UGT 3.85% 4CL 3.73%
Other Families 59.64%
More Families (95)
7DLGT 146 3.02% T3O 145 3.0% F3H 139 2.88% DWF4/CYP90B1 118 2.44% F3'H/CYP75B 114 2.36% NMT 96 1.99% BR6OX2/CYP85A2 96 1.99% TPS 94 1.95% UFGT 89 1.84% H6H 87 1.8% GES 72 1.49% STR 72 1.49% CYP90D1 71 1.47% CODM/T6ODM 68 1.41% T16H 64 1.32% IO 64 1.32% CYP71 64 1.32% CAS 63 1.3% CAD 57 1.18% CSE 53 1.1% SMT1/SMT2/SMT3 53 1.1% 7DLH 50 1.03% LAC 49 1.01% TRI/TRII 43 0.89% F3'5'H/CYP75A 43 0.89% SLS 39 0.81% COMT 37 0.77% GS 35 0.72% FNS 35 0.72% PYKS 34 0.7% IFR 33 0.68% F5H/CYP84A 31 0.64% 16OMT 29 0.6% CPD/CYP90A1 29 0.6% G8O/G8H 28 0.58% CCR 25 0.52% PMT 24 0.5% SGD 22 0.46% NCS 22 0.46% CYP51G1 22 0.46% 8HGO 21 0.43% LAMT 20 0.41% ANR 20 0.41% TAT 20 0.41% BR6OX1/CYP85A1 20 0.41% CYP719 16 0.33% PAL 15 0.31% HCT 15 0.31% BBE 14 0.29% RAS 14 0.29% MPO 12 0.25% COR 12 0.25% CHS 12 0.25% ANS/LDOX 12 0.25% ROT3/CYP90C1 12 0.25% DFR 11 0.23% HPPR 10 0.21% CNMT 9 0.19% SQS/FDFT1 9 0.19% AACT 9 0.19% TYDC_DDC 8 0.17% DWF7 8 0.17% DET2 8 0.17% DXS 8 0.17% CYP80B1 7 0.14% DWF1 7 0.14% IDI 7 0.14% HMGR 7 0.14% MVD 7 0.14% HDR/IspH 6 0.12% FPPS 6 0.12% CHI 5 0.1% CPR 5 0.1% SQE 5 0.1% MVK 5 0.1% HDS/IspG 5 0.1% CCoAOMT 4 0.08% SMO1/SMO2 4 0.08% HYD1 3 0.06% MCT/IspD 3 0.06% HMGS 3 0.06% GPPS 3 0.06% XMT_MXMT_DXMT 2 0.04% FLS 2 0.04% DWF5 2 0.04% FK 2 0.04% PMK 2 0.04% DXR 2 0.04% ODC 1 0.02% 6OMT_4OMT_SOMT 1 0.02% TDC 1 0.02% CPI1 1 0.02% MDS/IspF 1 0.02% CMK/IspE 1 0.02% GGPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (219) View species results
Phenylpropanoid pathway 424 11 POD (180) View species results
Alkaloid pathway 417 22 7DLGT (64) View species results
Flavonoid pathway 163 12 UFGT (66) View species results
Rosmarinic acid pathway 138 7 C4H (58) View species results
Steroid pathway 119 14 CAS (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2141 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 312 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP90D1
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Gene Pathway Family Confidence Status
Ebreopera_scaffold_50020279200 Steroid CYP90D1 low borderline
Ebreopera_scaffold_50030279230 Steroid CYP90D1 low borderline
Ebreopera_scaffold_50250280010 Steroid CYP90D1 low borderline
Ebreopera_scaffold_5090281960 Steroid CYP90D1 low borderline
Ebreopera_scaffold_54110291850 Steroid CYP90D1 low borderline
Ebreopera_scaffold_57590301190 Steroid CYP90D1 low borderline
Ebreopera_scaffold_593940306350 Steroid CYP90D1 medium borderline
Ebreopera_scaffold_63500316530 Steroid CYP90D1 low borderline
Ebreopera_scaffold_63770317260 Steroid CYP90D1 low borderline
Ebreopera_scaffold_64710319500 Steroid CYP90D1 medium borderline
Ebreopera_scaffold_69440329010 Steroid CYP90D1 low borderline
Ebreopera_scaffold_7600341300 Steroid CYP90D1 low borderline
Ebreopera_scaffold_78540345600 Steroid CYP90D1 low borderline
Ebreopera_scaffold_8050348940 Steroid CYP90D1 low borderline
Ebreopera_scaffold_8050348950 Steroid CYP90D1 low borderline
Ebreopera_scaffold_8050348960 Steroid CYP90D1 low borderline
Ebreopera_scaffold_80950349700 Steroid CYP90D1 medium pass
Ebreopera_scaffold_8440355010 Steroid CYP90D1 low borderline
Ebreopera_scaffold_9560370060 Steroid CYP90D1 medium borderline
Ebreopera_scaffold_983650373220 Steroid CYP90D1 low borderline
Ebreopera_scaffold_99380374320 Steroid CYP90D1 low borderline