PlantSME Plant secondary metabolism enzyme database

Erigeron breviscapus (erigeron_breviscapus)

Imported from atlas release summary for Erigeron breviscapus.

1899
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 33.6% Phenylpropanoid pathway 22.33% Alkaloid pathway 21.96% Flavonoid pathway 8.58% Rosmarinic acid pathway 7.27% Steroid pathway 6.27%
Family Distribution
C4H 7.62% C3'H/CYP98A 6.81% BAHD 5.86% CYP76 4.43% IFS 4.08% POD 4.0% UGT 3.85% 4CL 3.73%
Other Families 59.64%
More Families (95)
7DLGT 146 3.02% T3O 145 3.0% F3H 139 2.88% DWF4/CYP90B1 118 2.44% F3'H/CYP75B 114 2.36% NMT 96 1.99% BR6OX2/CYP85A2 96 1.99% TPS 94 1.95% UFGT 89 1.84% H6H 87 1.8% GES 72 1.49% STR 72 1.49% CYP90D1 71 1.47% CODM/T6ODM 68 1.41% T16H 64 1.32% IO 64 1.32% CYP71 64 1.32% CAS 63 1.3% CAD 57 1.18% CSE 53 1.1% SMT1/SMT2/SMT3 53 1.1% 7DLH 50 1.03% LAC 49 1.01% TRI/TRII 43 0.89% F3'5'H/CYP75A 43 0.89% SLS 39 0.81% COMT 37 0.77% GS 35 0.72% FNS 35 0.72% PYKS 34 0.7% IFR 33 0.68% F5H/CYP84A 31 0.64% 16OMT 29 0.6% CPD/CYP90A1 29 0.6% G8O/G8H 28 0.58% CCR 25 0.52% PMT 24 0.5% SGD 22 0.46% NCS 22 0.46% CYP51G1 22 0.46% 8HGO 21 0.43% LAMT 20 0.41% ANR 20 0.41% TAT 20 0.41% BR6OX1/CYP85A1 20 0.41% CYP719 16 0.33% PAL 15 0.31% HCT 15 0.31% BBE 14 0.29% RAS 14 0.29% MPO 12 0.25% COR 12 0.25% CHS 12 0.25% ANS/LDOX 12 0.25% ROT3/CYP90C1 12 0.25% DFR 11 0.23% HPPR 10 0.21% CNMT 9 0.19% SQS/FDFT1 9 0.19% AACT 9 0.19% TYDC_DDC 8 0.17% DWF7 8 0.17% DET2 8 0.17% DXS 8 0.17% CYP80B1 7 0.14% DWF1 7 0.14% IDI 7 0.14% HMGR 7 0.14% MVD 7 0.14% HDR/IspH 6 0.12% FPPS 6 0.12% CHI 5 0.1% CPR 5 0.1% SQE 5 0.1% MVK 5 0.1% HDS/IspG 5 0.1% CCoAOMT 4 0.08% SMO1/SMO2 4 0.08% HYD1 3 0.06% MCT/IspD 3 0.06% HMGS 3 0.06% GPPS 3 0.06% XMT_MXMT_DXMT 2 0.04% FLS 2 0.04% DWF5 2 0.04% FK 2 0.04% PMK 2 0.04% DXR 2 0.04% ODC 1 0.02% 6OMT_4OMT_SOMT 1 0.02% TDC 1 0.02% CPI1 1 0.02% MDS/IspF 1 0.02% CMK/IspE 1 0.02% GGPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (219) View species results
Phenylpropanoid pathway 424 11 POD (180) View species results
Alkaloid pathway 417 22 7DLGT (64) View species results
Flavonoid pathway 163 12 UFGT (66) View species results
Rosmarinic acid pathway 138 7 C4H (58) View species results
Steroid pathway 119 14 CAS (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2141 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 312 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: RAS
Reset
Gene Pathway Family Confidence Status
Ebreopera_scaffold_120021920 Rosmarinic Acid RAS low borderline
Ebreopera_scaffold_128100029950 Rosmarinic Acid RAS low borderline
Ebreopera_scaffold_16820069210 Rosmarinic Acid RAS medium pass
Ebreopera_scaffold_16820069220 Rosmarinic Acid RAS medium pass
Ebreopera_scaffold_190050092220 Rosmarinic Acid RAS medium pass
Ebreopera_scaffold_250140150130 Rosmarinic Acid RAS low borderline
Ebreopera_scaffold_270920166690 Rosmarinic Acid RAS medium pass
Ebreopera_scaffold_328080204800 Rosmarinic Acid RAS low borderline
Ebreopera_scaffold_352200218710 Rosmarinic Acid RAS low borderline
Ebreopera_scaffold_560296950 Rosmarinic Acid RAS low borderline
Ebreopera_scaffold_66250322850 Rosmarinic Acid RAS low borderline
Ebreopera_scaffold_73330336450 Rosmarinic Acid RAS medium pass
Ebreopera_scaffold_87670359480 Rosmarinic Acid RAS low borderline
Ebreopera_scaffold_89820362160 Rosmarinic Acid RAS low borderline