PlantSME Plant secondary metabolism enzyme database

Eucalyptus grandis (eucalyptus_grandis)

Imported from atlas release summary for Eucalyptus grandis.

3614
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.47% Alkaloid pathway 21.72% Phenylpropanoid pathway 19.76% Flavonoid pathway 16.1% Rosmarinic acid pathway 8.08% Steroid pathway 5.87%
Family Distribution
C3'H/CYP98A 6.21% C4H 5.93% BAHD 5.1% UGT 4.8% 7DLGT 4.64% UFGT 4.58% IFS 4.08% CYP76 4.06%
Other Families 60.6%
More Families (97)
T3O 281 3.27% 4CL 264 3.08% DWF4/CYP90B1 237 2.76% F3H 234 2.73% CAD 218 2.54% POD 202 2.35% F3'H/CYP75B 172 2.0% NMT 146 1.7% SMT1/SMT2/SMT3 130 1.51% STR 129 1.5% BR6OX2/CYP85A2 129 1.5% GS 127 1.48% H6H 122 1.42% CAS 121 1.41% CODM/T6ODM 118 1.38% LAC 116 1.35% IFR 114 1.33% TPS 114 1.33% GES 109 1.27% COMT 104 1.21% TRI/TRII 90 1.05% CYP90D1 86 1.0% CSE 85 0.99% CYP71 79 0.92% IO 76 0.89% HCT 75 0.87% 7DLH 74 0.86% NCS 71 0.83% ANR 68 0.79% PMT 65 0.76% RAS 65 0.76% TAT 64 0.75% 16OMT 58 0.68% SLS 56 0.65% G8O/G8H 54 0.63% CYP51G1 53 0.62% SGD 51 0.59% LAMT 49 0.57% T16H 46 0.54% COR 45 0.52% 8HGO 45 0.52% F3'5'H/CYP75A 44 0.51% PYKS 41 0.48% CCR 36 0.42% CPD/CYP90A1 35 0.41% FNS 34 0.4% BBE 33 0.38% PAL 33 0.38% F5H/CYP84A 27 0.31% CCoAOMT 27 0.31% ROT3/CYP90C1 22 0.26% CYP719 20 0.23% BR6OX1/CYP85A1 19 0.22% CHS 17 0.2% CPR 17 0.2% HPPR 15 0.17% AACT 15 0.17% CNMT 14 0.16% DFR 14 0.16% ANS/LDOX 13 0.15% SQS/FDFT1 13 0.15% MPO 12 0.14% CHI 11 0.13% TYDC_DDC 10 0.12% SQE 10 0.12% HMGR 9 0.1% GGPPS 9 0.1% FPPS 9 0.1% 6OMT_4OMT_SOMT 8 0.09% FLS 8 0.09% MCT/IspD 8 0.09% DET2 7 0.08% XMT_MXMT_DXMT 6 0.07% MVD 6 0.07% PMK 5 0.06% FK 4 0.05% IDI 4 0.05% MVK 4 0.05% DXS 4 0.05% CPI1 3 0.03% SMO1/SMO2 3 0.03% DWF5 3 0.03% HYD1 3 0.03% CMK/IspE 3 0.03% ISY 2 0.02% TDC 2 0.02% CYP80B1 2 0.02% DWF7 2 0.02% HDS/IspG 2 0.02% HDR/IspH 2 0.02% MDS/IspF 2 0.02% ODC 1 0.01% ADC 1 0.01% DWF1 1 0.01% DXR 1 0.01% HMGS 1 0.01% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1029 19 UGT (393) View species results
Alkaloid pathway 785 23 7DLGT (204) View species results
Phenylpropanoid pathway 714 11 POD (195) View species results
Flavonoid pathway 582 13 UFGT (376) View species results
Rosmarinic acid pathway 292 7 C4H (127) View species results
Steroid pathway 212 13 SMT1/SMT2/SMT3 (96) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 3252 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 578 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
Egra05G0030130.1 Terpenoid FPPS medium borderline FPPS__00005__sp_P34802_GGPP1_ARATH
Egra05G0031460.1 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
Egra05G0031470.1 Terpenoid FPPS medium pass FPPS__00006__sp_P49350_FPPS_ARTAN
Egra05G0031470.2 Terpenoid FPPS medium pass FPPS__00006__sp_P49350_FPPS_ARTAN
Egra06G0007070.1 Terpenoid FPPS medium borderline FPPS__00005__sp_P34802_GGPP1_ARATH
Egra09G0018880.1 Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Egra10G0016090.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Egra10G0016100.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Egra10G0021490.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC