Fragaria nubicola (fragaria_nubicola)
Imported from atlas release summary for Fragaria nubicola.
1679
Candidate Protein Records
1468
Pathway-Level Records
3405
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3405
Family-Level Calls
C4H
6.02%
BAHD
5.79%
C3'H/CYP98A
5.11%
UGT
4.9%
7DLGT
4.17%
UFGT
4.17%
IFS
4.14%
POD
3.76%
Other Families
61.94%
More Families (95)
4CL
117
3.44%
CYP76
116
3.41%
T3O
105
3.08%
F3H
96
2.82%
NMT
78
2.29%
DWF4/CYP90B1
69
2.03%
H6H
66
1.94%
STR
65
1.91%
CAD
63
1.85%
LAC
55
1.62%
CODM/T6ODM
53
1.56%
F3'H/CYP75B
51
1.5%
CAS
46
1.35%
CYP90D1
46
1.35%
BR6OX2/CYP85A2
46
1.35%
TPS
45
1.32%
SMT1/SMT2/SMT3
43
1.26%
GS
40
1.17%
CSE
38
1.12%
GES
37
1.09%
CYP71
36
1.06%
HCT
35
1.03%
T16H
32
0.94%
7DLH
30
0.88%
TRI/TRII
30
0.88%
G8O/G8H
30
0.88%
TAT
28
0.82%
IFR
27
0.79%
IO
25
0.73%
COMT
25
0.73%
PMT
24
0.7%
ANR
24
0.7%
SGD
23
0.68%
CCR
23
0.68%
BR6OX1/CYP85A1
23
0.68%
FNS
22
0.65%
PYKS
21
0.62%
F5H/CYP84A
20
0.59%
RAS
20
0.59%
SLS
19
0.56%
F3'5'H/CYP75A
18
0.53%
LAMT
16
0.47%
CCoAOMT
16
0.47%
16OMT
14
0.41%
CYP51G1
14
0.41%
DFR
13
0.38%
CNMT
12
0.35%
8HGO
12
0.35%
SQE
12
0.35%
NCS
11
0.32%
ROT3/CYP90C1
10
0.29%
CPD/CYP90A1
10
0.29%
FPPS
10
0.29%
MPO
9
0.26%
COR
9
0.26%
ANS/LDOX
9
0.26%
BBE
8
0.23%
HMGR
8
0.23%
GGPPS
7
0.21%
AACT
7
0.21%
CHS
6
0.18%
PAL
6
0.18%
DET2
6
0.18%
ISY
5
0.15%
HPPR
5
0.15%
ODC
4
0.12%
CHI
4
0.12%
CPR
4
0.12%
SQS/FDFT1
4
0.12%
PMK
4
0.12%
DXS
4
0.12%
CYP719
3
0.09%
6OMT_4OMT_SOMT
3
0.09%
SMO1/SMO2
3
0.09%
MVD
3
0.09%
XMT_MXMT_DXMT
2
0.06%
TYDC_DDC
2
0.06%
CYP80B1
2
0.06%
FLS
2
0.06%
HYD1
2
0.06%
DWF1
2
0.06%
MVK
2
0.06%
IDI
2
0.06%
ADC
1
0.03%
TDC
1
0.03%
DWF7
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
HDR/IspH
1
0.03%
HDS/IspG
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
DXR
1
0.03%
CMK/IspE
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 439 | 16 | BAHD (165) | View species results |
| Phenylpropanoid pathway | 317 | 12 | POD (121) | View species results |
| Alkaloid pathway | 313 | 24 | 7DLGT (66) | View species results |
| Flavonoid pathway | 186 | 11 | UFGT (132) | View species results |
| Rosmarinic acid pathway | 121 | 7 | C4H (54) | View species results |
| Steroid pathway | 92 | 11 | CAS (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1225 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 252 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| fragaria_nubicola_evm.model.ctg177.91 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_nubicola_evm.model.ctg177.93 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_nubicola_evm.model.ctg204.12 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| fragaria_nubicola_evm.model.ctg219.6 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| fragaria_nubicola_evm.model.ctg40.75 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| fragaria_nubicola_evm.model.ctg42.13 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| fragaria_nubicola_evm.model.ctg49.4 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| fragaria_nubicola_evm.model.ctg56.149 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| fragaria_nubicola_evm.model.ctg65.254 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| fragaria_nubicola_evm.model.ctg77.58 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| fragaria_nubicola_evm.model.ctg82.1009 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_nubicola_evm.model.ctg82.489 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| fragaria_nubicola_evm.model.ctg82.561 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00009__sp_Q67W82_4CL4_ORYSJ |
| fragaria_nubicola_evm.model.ctg84.363 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ |
| fragaria_nubicola_evm.model.ctg84.673 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| fragaria_nubicola_evm.model.ctg84.676 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| fragaria_nubicola_evm.model.ctg88.53 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |