PlantSME Plant secondary metabolism enzyme database

Fragaria nubicola (fragaria_nubicola)

Imported from atlas release summary for Fragaria nubicola.

1468
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 439 16 BAHD (165) View species results
Phenylpropanoid pathway 317 12 POD (121) View species results
Alkaloid pathway 313 24 7DLGT (66) View species results
Flavonoid pathway 186 11 UFGT (132) View species results
Rosmarinic acid pathway 121 7 C4H (54) View species results
Steroid pathway 92 11 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1225 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 252 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
fragaria_nubicola_evm.model.ctg119.561 Alkaloid T16H low borderline
fragaria_nubicola_evm.model.ctg119.745 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg121.88 Alkaloid T16H low borderline
fragaria_nubicola_evm.model.ctg128.213 Alkaloid T16H low borderline
fragaria_nubicola_evm.model.ctg128.376 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg128.386 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg128.387 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg128.388 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg128.389 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg128.75 Alkaloid T16H low borderline
fragaria_nubicola_evm.model.ctg130.128 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg130.147 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg130.148 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg137.65 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg146.262 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg151.459 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg151.46 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg151.465_evm.model.ctg151.466 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg151.468 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg151.566 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg161.276 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg161.278 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg34.34 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg49.115 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg5.374 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg54.251 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg66.24 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg8.171 Alkaloid T16H low borderline
fragaria_nubicola_evm.model.ctg82.354 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg82.496 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg82.501 Alkaloid T16H medium borderline
fragaria_nubicola_evm.model.ctg94.158 Alkaloid T16H medium borderline