Fragaria nubicola (fragaria_nubicola)
Imported from atlas release summary for Fragaria nubicola.
1468
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1468
Candidate Genes
C4H
6.02%
BAHD
5.79%
C3'H/CYP98A
5.11%
UGT
4.9%
7DLGT
4.17%
UFGT
4.17%
IFS
4.14%
POD
3.76%
Other Families
61.94%
More Families (95)
4CL
117
3.44%
CYP76
116
3.41%
T3O
105
3.08%
F3H
96
2.82%
NMT
78
2.29%
DWF4/CYP90B1
69
2.03%
H6H
66
1.94%
STR
65
1.91%
CAD
63
1.85%
LAC
55
1.62%
CODM/T6ODM
53
1.56%
F3'H/CYP75B
51
1.5%
CAS
46
1.35%
CYP90D1
46
1.35%
BR6OX2/CYP85A2
46
1.35%
TPS
45
1.32%
SMT1/SMT2/SMT3
43
1.26%
GS
40
1.17%
CSE
38
1.12%
GES
37
1.09%
CYP71
36
1.06%
HCT
35
1.03%
T16H
32
0.94%
7DLH
30
0.88%
TRI/TRII
30
0.88%
G8O/G8H
30
0.88%
TAT
28
0.82%
IFR
27
0.79%
IO
25
0.73%
COMT
25
0.73%
PMT
24
0.7%
ANR
24
0.7%
SGD
23
0.68%
CCR
23
0.68%
BR6OX1/CYP85A1
23
0.68%
FNS
22
0.65%
PYKS
21
0.62%
F5H/CYP84A
20
0.59%
RAS
20
0.59%
SLS
19
0.56%
F3'5'H/CYP75A
18
0.53%
LAMT
16
0.47%
CCoAOMT
16
0.47%
16OMT
14
0.41%
CYP51G1
14
0.41%
DFR
13
0.38%
CNMT
12
0.35%
8HGO
12
0.35%
SQE
12
0.35%
NCS
11
0.32%
ROT3/CYP90C1
10
0.29%
CPD/CYP90A1
10
0.29%
FPPS
10
0.29%
MPO
9
0.26%
COR
9
0.26%
ANS/LDOX
9
0.26%
BBE
8
0.23%
HMGR
8
0.23%
GGPPS
7
0.21%
AACT
7
0.21%
CHS
6
0.18%
PAL
6
0.18%
DET2
6
0.18%
ISY
5
0.15%
HPPR
5
0.15%
ODC
4
0.12%
CHI
4
0.12%
CPR
4
0.12%
SQS/FDFT1
4
0.12%
PMK
4
0.12%
DXS
4
0.12%
CYP719
3
0.09%
6OMT_4OMT_SOMT
3
0.09%
SMO1/SMO2
3
0.09%
MVD
3
0.09%
XMT_MXMT_DXMT
2
0.06%
TYDC_DDC
2
0.06%
CYP80B1
2
0.06%
FLS
2
0.06%
HYD1
2
0.06%
DWF1
2
0.06%
MVK
2
0.06%
IDI
2
0.06%
ADC
1
0.03%
TDC
1
0.03%
DWF7
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
HDR/IspH
1
0.03%
HDS/IspG
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
DXR
1
0.03%
CMK/IspE
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 439 | 16 | BAHD (165) | View species results |
| Phenylpropanoid pathway | 317 | 12 | POD (121) | View species results |
| Alkaloid pathway | 313 | 24 | 7DLGT (66) | View species results |
| Flavonoid pathway | 186 | 11 | UFGT (132) | View species results |
| Rosmarinic acid pathway | 121 | 7 | C4H (54) | View species results |
| Steroid pathway | 92 | 11 | CAS (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1225 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 252 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| fragaria_nubicola_evm.model.ctg9.174 | Alkaloid | 8HGO | low | borderline |
| fragaria_nubicola_evm.model.ctg105.378 | Alkaloid | ADC | medium | pass |
| fragaria_nubicola_evm.model.ctg119.718 | Alkaloid | BBE | low | borderline |
| fragaria_nubicola_evm.model.ctg164.87 | Alkaloid | BBE | medium | borderline |
| fragaria_nubicola_evm.model.ctg164.88 | Alkaloid | BBE | medium | borderline |
| fragaria_nubicola_evm.model.ctg164.89 | Alkaloid | BBE | medium | borderline |
| fragaria_nubicola_evm.model.ctg38.344 | Alkaloid | BBE | medium | borderline |
| fragaria_nubicola_evm.model.ctg40.109 | Alkaloid | BBE | medium | borderline |
| fragaria_nubicola_evm.model.ctg72.96 | Alkaloid | BBE | low | borderline |
| fragaria_nubicola_evm.model.ctg99.10 | Alkaloid | BBE | medium | borderline |
| fragaria_nubicola_evm.model.ctg105.36 | Alkaloid | CNMT | low | borderline |
| fragaria_nubicola_evm.model.ctg119.243 | Alkaloid | CNMT | medium | borderline |
| fragaria_nubicola_evm.model.ctg129.469 | Alkaloid | CNMT | medium | pass |
| fragaria_nubicola_evm.model.ctg135.210 | Alkaloid | CNMT | low | borderline |
| fragaria_nubicola_evm.model.ctg152.105 | Alkaloid | CNMT | low | borderline |
| fragaria_nubicola_evm.model.ctg165.51 | Alkaloid | CNMT | low | borderline |
| fragaria_nubicola_evm.model.ctg170.9 | Alkaloid | CNMT | low | borderline |
| fragaria_nubicola_evm.model.ctg179.165 | Alkaloid | CNMT | low | borderline |
| fragaria_nubicola_evm.model.ctg196.4 | Alkaloid | CNMT | low | borderline |
| fragaria_nubicola_evm.model.ctg54.99 | Alkaloid | CNMT | low | borderline |
| fragaria_nubicola_evm.model.ctg57.206 | Alkaloid | CNMT | low | borderline |
| fragaria_nubicola_evm.model.ctg81.703 | Alkaloid | CNMT | low | borderline |
| fragaria_nubicola_evm.model.ctg101.258_evm.model.ctg101.259 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg104.360 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg104.361 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg104.362 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg104.368 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg108.84 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg112.32 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg114.163 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg114.166 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg114.167 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg118.28 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg119.94 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg119.95 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg119.99 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg124.129 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg124.264 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg124.337 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg124.566 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg125.4 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg126.154 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg128.190 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg130.24 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg132.229 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg134.144 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg136.165 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg150.101 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg155.116_evm.model.ctg155.117 | Alkaloid | CODM/T6ODM | medium | borderline |
| fragaria_nubicola_evm.model.ctg155.64 | Alkaloid | CODM/T6ODM | medium | borderline |