PlantSME Plant secondary metabolism enzyme database

Gackstroemia magellanica (gackstroemia_magellanica)

Imported from atlas release summary for Gackstroemia magellanica.

644
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 28.88% Terpenoid pathway 22.52% Alkaloid pathway 20.81% Flavonoid pathway 11.96% Rosmarinic acid pathway 9.78% Steroid pathway 6.06%
Family Distribution
4CL 6.93% BAHD 5.78% POD 5.2% C3'H/CYP98A 5.08% C4H 4.79% STR 3.52% GS 3.29% IFS 3.18%
Other Families 62.22%
More Families (92)
CYP76 55 3.18% NMT 51 2.95% T3O 41 2.37% TRI/TRII 41 2.37% IFR 41 2.37% CAD 37 2.14% F3H 36 2.08% DWF4/CYP90B1 35 2.02% HCT 31 1.79% BR6OX2/CYP85A2 30 1.73% F3'H/CYP75B 28 1.62% UGT 27 1.56% UFGT 26 1.5% 7DLGT 25 1.44% H6H 24 1.39% RAS 23 1.33% LAC 19 1.1% TPS 19 1.1% PAL 18 1.04% CAS 17 0.98% CODM/T6ODM 16 0.92% TAT 16 0.92% T16H 15 0.87% IO 15 0.87% F3'5'H/CYP75A 15 0.87% COMT 15 0.87% CSE 14 0.81% SMT1/SMT2/SMT3 14 0.81% DFR 13 0.75% SLS 12 0.69% CCR 12 0.69% GGPPS 12 0.69% GES 11 0.64% G8O/G8H 11 0.64% COR 11 0.64% CYP90D1 11 0.64% 8HGO 10 0.58% CNMT 10 0.58% PYKS 10 0.58% SGD 10 0.58% CPD/CYP90A1 10 0.58% ANR 9 0.52% PMT 8 0.46% LAMT 8 0.46% CPR 8 0.46% HPPR 8 0.46% NCS 7 0.4% CHS 7 0.4% CCoAOMT 6 0.35% BR6OX1/CYP85A1 6 0.35% CYP51G1 6 0.35% CYP71 6 0.35% AACT 6 0.35% MPO 5 0.29% CYP719 5 0.29% FNS 5 0.29% CYP80B1 4 0.23% 6OMT_4OMT_SOMT 4 0.23% ANS/LDOX 4 0.23% SQE 4 0.23% SQS/FDFT1 4 0.23% MVK 4 0.23% 7DLH 3 0.17% 16OMT 3 0.17% ADC 3 0.17% CHI 3 0.17% DWF1 3 0.17% SMO1/SMO2 3 0.17% DWF5 3 0.17% DET2 3 0.17% HMGR 3 0.17% MVD 3 0.17% MCT/IspD 3 0.17% HDR/IspH 3 0.17% CMK/IspE 3 0.17% BBE 2 0.12% HYD1 2 0.12% CPI1 2 0.12% DWF7 2 0.12% IDI 2 0.12% DXS 2 0.12% FPPS 2 0.12% DXR 2 0.12% HDS/IspG 2 0.12% PMK 2 0.12% ODC 1 0.06% TYDC_DDC 1 0.06% TDC 1 0.06% F5H/CYP84A 1 0.06% FK 1 0.06% ROT3/CYP90C1 1 0.06% HMGS 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 186 11 POD (86) View species results
Terpenoid pathway 145 19 BAHD (58) View species results
Alkaloid pathway 134 16 GS (25) View species results
Flavonoid pathway 77 10 UFGT (24) View species results
Rosmarinic acid pathway 63 7 C4H (19) View species results
Steroid pathway 39 11 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 536 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 154 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
Gmag6243610211170 Alkaloid GS medium pass
Gmag6244330211390 Alkaloid GS medium pass
Gmag6254010214480 Alkaloid GS medium pass
Gmag6546240222130 Alkaloid GS high pass
Gmag6546250222140 Alkaloid GS high pass
Gmag6850680225560 Alkaloid GS medium pass
Gmag6850690225660 Alkaloid GS medium pass