PlantSME Plant secondary metabolism enzyme database

Gackstroemia magellanica (gackstroemia_magellanica)

Imported from atlas release summary for Gackstroemia magellanica.

976
Candidate Protein Records
644
Pathway-Level Records
1731
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Phenylpropanoid pathway 28.88% Terpenoid pathway 22.52% Alkaloid pathway 20.81% Flavonoid pathway 11.96% Rosmarinic acid pathway 9.78% Steroid pathway 6.06%
Family Distribution
4CL 6.93% BAHD 5.78% POD 5.2% C3'H/CYP98A 5.08% C4H 4.79% STR 3.52% GS 3.29% IFS 3.18%
Other Families 62.22%
More Families (92)
CYP76 55 3.18% NMT 51 2.95% T3O 41 2.37% TRI/TRII 41 2.37% IFR 41 2.37% CAD 37 2.14% F3H 36 2.08% DWF4/CYP90B1 35 2.02% HCT 31 1.79% BR6OX2/CYP85A2 30 1.73% F3'H/CYP75B 28 1.62% UGT 27 1.56% UFGT 26 1.5% 7DLGT 25 1.44% H6H 24 1.39% RAS 23 1.33% LAC 19 1.1% TPS 19 1.1% PAL 18 1.04% CAS 17 0.98% CODM/T6ODM 16 0.92% TAT 16 0.92% T16H 15 0.87% IO 15 0.87% F3'5'H/CYP75A 15 0.87% COMT 15 0.87% CSE 14 0.81% SMT1/SMT2/SMT3 14 0.81% DFR 13 0.75% SLS 12 0.69% CCR 12 0.69% GGPPS 12 0.69% GES 11 0.64% G8O/G8H 11 0.64% COR 11 0.64% CYP90D1 11 0.64% 8HGO 10 0.58% CNMT 10 0.58% PYKS 10 0.58% SGD 10 0.58% CPD/CYP90A1 10 0.58% ANR 9 0.52% PMT 8 0.46% LAMT 8 0.46% CPR 8 0.46% HPPR 8 0.46% NCS 7 0.4% CHS 7 0.4% CCoAOMT 6 0.35% BR6OX1/CYP85A1 6 0.35% CYP51G1 6 0.35% CYP71 6 0.35% AACT 6 0.35% MPO 5 0.29% CYP719 5 0.29% FNS 5 0.29% CYP80B1 4 0.23% 6OMT_4OMT_SOMT 4 0.23% ANS/LDOX 4 0.23% SQE 4 0.23% SQS/FDFT1 4 0.23% MVK 4 0.23% 7DLH 3 0.17% 16OMT 3 0.17% ADC 3 0.17% CHI 3 0.17% DWF1 3 0.17% SMO1/SMO2 3 0.17% DWF5 3 0.17% DET2 3 0.17% HMGR 3 0.17% MVD 3 0.17% MCT/IspD 3 0.17% HDR/IspH 3 0.17% CMK/IspE 3 0.17% BBE 2 0.12% HYD1 2 0.12% CPI1 2 0.12% DWF7 2 0.12% IDI 2 0.12% DXS 2 0.12% FPPS 2 0.12% DXR 2 0.12% HDS/IspG 2 0.12% PMK 2 0.12% ODC 1 0.06% TYDC_DDC 1 0.06% TDC 1 0.06% F5H/CYP84A 1 0.06% FK 1 0.06% ROT3/CYP90C1 1 0.06% HMGS 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 186 11 POD (86) View species results
Terpenoid pathway 145 19 BAHD (58) View species results
Alkaloid pathway 134 16 GS (25) View species results
Flavonoid pathway 77 10 UFGT (24) View species results
Rosmarinic acid pathway 63 7 C4H (19) View species results
Steroid pathway 39 11 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 536 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 154 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Gmag6192690189210 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Gmag6208430196260 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Gmag6215780199330 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Gmag6226970204000 Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH
Gmag6230060205200 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Gmag6231360205940 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Gmag6233000206680 Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Gmag6246590212170 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Gmag6566740222540 Phenylpropanoid POD medium pass POD__00016__sp_Q6QPJ6_PRXQ_POPJC
Gmag6566750222550 Phenylpropanoid POD medium pass POD__00016__sp_Q6QPJ6_PRXQ_POPJC
Gmag6599700223020 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Gmag6599710223030 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Gmag6628560223580 Phenylpropanoid POD low borderline POD__00007__sp_P0C5C9_REHYA_ORYSJ
Gmag6628570223590 Phenylpropanoid POD low borderline POD__00007__sp_P0C5C9_REHYA_ORYSJ