Gastrodia menghaiensis (gastrodia_menghaiensis)
Imported from atlas release summary for Gastrodia menghaiensis.
665
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
665
Candidate Genes
C4H
7.08%
C3'H/CYP98A
6.32%
BAHD
5.35%
T3O
4.27%
4CL
4.05%
IFS
4.0%
CYP76
3.35%
POD
3.3%
Other Families
62.29%
More Families (96)
NMT
55
2.97%
CYP71
55
2.97%
F3'H/CYP75B
46
2.49%
STR
44
2.38%
UFGT
44
2.38%
UGT
42
2.27%
7DLGT
41
2.22%
F3H
40
2.16%
DWF4/CYP90B1
39
2.11%
BR6OX2/CYP85A2
35
1.89%
CAD
34
1.84%
PYKS
30
1.62%
CAS
25
1.35%
TPS
24
1.3%
GES
23
1.24%
SMT1/SMT2/SMT3
23
1.24%
CYP90D1
22
1.19%
GS
21
1.13%
G8O/G8H
20
1.08%
CHS
20
1.08%
COMT
20
1.08%
SLS
18
0.97%
CODM/T6ODM
18
0.97%
IFR
18
0.97%
FNS
18
0.97%
H6H
17
0.92%
T16H
15
0.81%
TRI/TRII
15
0.81%
16OMT
15
0.81%
F5H/CYP84A
15
0.81%
CYP51G1
15
0.81%
NCS
14
0.76%
LAC
14
0.76%
CSE
13
0.7%
PMT
11
0.59%
LAMT
11
0.59%
SGD
11
0.59%
ANR
11
0.59%
CCR
10
0.54%
CNMT
9
0.49%
F3'5'H/CYP75A
9
0.49%
8HGO
8
0.43%
IO
8
0.43%
DET2
8
0.43%
ROT3/CYP90C1
7
0.38%
BR6OX1/CYP85A1
7
0.38%
BBE
6
0.32%
MPO
6
0.32%
PAL
6
0.32%
HCT
6
0.32%
RAS
6
0.32%
CPD/CYP90A1
6
0.32%
SQS/FDFT1
6
0.32%
GGPPS
5
0.27%
FPPS
5
0.27%
7DLH
4
0.22%
ISY
4
0.22%
CHI
4
0.22%
DFR
4
0.22%
CPR
4
0.22%
DWF1
4
0.22%
AACT
4
0.22%
COR
3
0.16%
XMT_MXMT_DXMT
3
0.16%
ANS/LDOX
3
0.16%
CCoAOMT
3
0.16%
TAT
3
0.16%
HMGR
3
0.16%
MVK
3
0.16%
IDI
3
0.16%
6OMT_4OMT_SOMT
2
0.11%
HPPR
2
0.11%
SMO1/SMO2
2
0.11%
MCT/IspD
2
0.11%
MDS/IspF
2
0.11%
TYDC_DDC
1
0.05%
CYP80B1
1
0.05%
CYP719
1
0.05%
TDC
1
0.05%
ADC
1
0.05%
FLS
1
0.05%
FK
1
0.05%
SQE
1
0.05%
DWF5
1
0.05%
DWF7
1
0.05%
HYD1
1
0.05%
CPI1
1
0.05%
CMK/IspE
1
0.05%
DXS
1
0.05%
PMK
1
0.05%
MVD
1
0.05%
HDR/IspH
1
0.05%
GPPS
1
0.05%
HMGS
1
0.05%
HDS/IspG
1
0.05%
DXR
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 180 | 19 | BAHD (72) | View species results |
| Alkaloid pathway | 171 | 18 | NMT (36) | View species results |
| Phenylpropanoid pathway | 134 | 11 | POD (59) | View species results |
| Flavonoid pathway | 83 | 9 | UFGT (38) | View species results |
| Rosmarinic acid pathway | 56 | 7 | C4H (27) | View species results |
| Steroid pathway | 41 | 12 | SMT1/SMT2/SMT3 (13) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 786 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 111 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| gastrodia_menghaiensis_evm.model.scaffold_103.151 | Alkaloid | GS | high | pass |
| gastrodia_menghaiensis_evm.model.scaffold_1167.19 | Alkaloid | GS | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_122.361 | Alkaloid | GS | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_126.436 | Alkaloid | GS | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_126.437 | Alkaloid | GS | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_1330.51 | Alkaloid | GS | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_161.239 | Alkaloid | GS | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_170.389 | Alkaloid | GS | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_184.264 | Alkaloid | GS | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_196.100 | Alkaloid | GS | high | pass |
| gastrodia_menghaiensis_evm.model.scaffold_27.14 | Alkaloid | GS | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_3.108 | Alkaloid | GS | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_36.176 | Alkaloid | GS | high | pass |
| gastrodia_menghaiensis_evm.model.scaffold_41.389 | Alkaloid | GS | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_41.401 | Alkaloid | GS | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_41.402 | Alkaloid | GS | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_69.76 | Alkaloid | GS | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_769.172 | Alkaloid | GS | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_81.281 | Alkaloid | GS | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_90.583 | Alkaloid | GS | high | pass |
| gastrodia_menghaiensis_evm.model.scaffold_90.608 | Alkaloid | GS | high | pass |