PlantSME Plant secondary metabolism enzyme database

Gastrodia menghaiensis (gastrodia_menghaiensis)

Imported from atlas release summary for Gastrodia menghaiensis.

665
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.07% Alkaloid pathway 25.71% Phenylpropanoid pathway 20.15% Flavonoid pathway 12.48% Rosmarinic acid pathway 8.42% Steroid pathway 6.17%
Family Distribution
C4H 7.08% C3'H/CYP98A 6.32% BAHD 5.35% T3O 4.27% 4CL 4.05% IFS 4.0% CYP76 3.35% POD 3.3%
Other Families 62.29%
More Families (96)
NMT 55 2.97% CYP71 55 2.97% F3'H/CYP75B 46 2.49% STR 44 2.38% UFGT 44 2.38% UGT 42 2.27% 7DLGT 41 2.22% F3H 40 2.16% DWF4/CYP90B1 39 2.11% BR6OX2/CYP85A2 35 1.89% CAD 34 1.84% PYKS 30 1.62% CAS 25 1.35% TPS 24 1.3% GES 23 1.24% SMT1/SMT2/SMT3 23 1.24% CYP90D1 22 1.19% GS 21 1.13% G8O/G8H 20 1.08% CHS 20 1.08% COMT 20 1.08% SLS 18 0.97% CODM/T6ODM 18 0.97% IFR 18 0.97% FNS 18 0.97% H6H 17 0.92% T16H 15 0.81% TRI/TRII 15 0.81% 16OMT 15 0.81% F5H/CYP84A 15 0.81% CYP51G1 15 0.81% NCS 14 0.76% LAC 14 0.76% CSE 13 0.7% PMT 11 0.59% LAMT 11 0.59% SGD 11 0.59% ANR 11 0.59% CCR 10 0.54% CNMT 9 0.49% F3'5'H/CYP75A 9 0.49% 8HGO 8 0.43% IO 8 0.43% DET2 8 0.43% ROT3/CYP90C1 7 0.38% BR6OX1/CYP85A1 7 0.38% BBE 6 0.32% MPO 6 0.32% PAL 6 0.32% HCT 6 0.32% RAS 6 0.32% CPD/CYP90A1 6 0.32% SQS/FDFT1 6 0.32% GGPPS 5 0.27% FPPS 5 0.27% 7DLH 4 0.22% ISY 4 0.22% CHI 4 0.22% DFR 4 0.22% CPR 4 0.22% DWF1 4 0.22% AACT 4 0.22% COR 3 0.16% XMT_MXMT_DXMT 3 0.16% ANS/LDOX 3 0.16% CCoAOMT 3 0.16% TAT 3 0.16% HMGR 3 0.16% MVK 3 0.16% IDI 3 0.16% 6OMT_4OMT_SOMT 2 0.11% HPPR 2 0.11% SMO1/SMO2 2 0.11% MCT/IspD 2 0.11% MDS/IspF 2 0.11% TYDC_DDC 1 0.05% CYP80B1 1 0.05% CYP719 1 0.05% TDC 1 0.05% ADC 1 0.05% FLS 1 0.05% FK 1 0.05% SQE 1 0.05% DWF5 1 0.05% DWF7 1 0.05% HYD1 1 0.05% CPI1 1 0.05% CMK/IspE 1 0.05% DXS 1 0.05% PMK 1 0.05% MVD 1 0.05% HDR/IspH 1 0.05% GPPS 1 0.05% HMGS 1 0.05% HDS/IspG 1 0.05% DXR 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 180 19 BAHD (72) View species results
Alkaloid pathway 171 18 NMT (36) View species results
Phenylpropanoid pathway 134 11 POD (59) View species results
Flavonoid pathway 83 9 UFGT (38) View species results
Rosmarinic acid pathway 56 7 C4H (27) View species results
Steroid pathway 41 12 SMT1/SMT2/SMT3 (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 786 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 111 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
gastrodia_menghaiensis_evm.model.scaffold_769.149 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
gastrodia_menghaiensis_evm.model.scaffold_81.339 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
gastrodia_menghaiensis_evm.model.scaffold_9.229 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
gastrodia_menghaiensis_evm.model.scaffold_90.283 Alkaloid NMT low borderline NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
gastrodia_menghaiensis_evm.model.scaffold_90.423 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH