PlantSME Plant secondary metabolism enzyme database

Gastrodia menghaiensis (gastrodia_menghaiensis)

Imported from atlas release summary for Gastrodia menghaiensis.

665
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.07% Alkaloid pathway 25.71% Phenylpropanoid pathway 20.15% Flavonoid pathway 12.48% Rosmarinic acid pathway 8.42% Steroid pathway 6.17%
Family Distribution
C4H 7.08% C3'H/CYP98A 6.32% BAHD 5.35% T3O 4.27% 4CL 4.05% IFS 4.0% CYP76 3.35% POD 3.3%
Other Families 62.29%
More Families (96)
NMT 55 2.97% CYP71 55 2.97% F3'H/CYP75B 46 2.49% STR 44 2.38% UFGT 44 2.38% UGT 42 2.27% 7DLGT 41 2.22% F3H 40 2.16% DWF4/CYP90B1 39 2.11% BR6OX2/CYP85A2 35 1.89% CAD 34 1.84% PYKS 30 1.62% CAS 25 1.35% TPS 24 1.3% GES 23 1.24% SMT1/SMT2/SMT3 23 1.24% CYP90D1 22 1.19% GS 21 1.13% G8O/G8H 20 1.08% CHS 20 1.08% COMT 20 1.08% SLS 18 0.97% CODM/T6ODM 18 0.97% IFR 18 0.97% FNS 18 0.97% H6H 17 0.92% T16H 15 0.81% TRI/TRII 15 0.81% 16OMT 15 0.81% F5H/CYP84A 15 0.81% CYP51G1 15 0.81% NCS 14 0.76% LAC 14 0.76% CSE 13 0.7% PMT 11 0.59% LAMT 11 0.59% SGD 11 0.59% ANR 11 0.59% CCR 10 0.54% CNMT 9 0.49% F3'5'H/CYP75A 9 0.49% 8HGO 8 0.43% IO 8 0.43% DET2 8 0.43% ROT3/CYP90C1 7 0.38% BR6OX1/CYP85A1 7 0.38% BBE 6 0.32% MPO 6 0.32% PAL 6 0.32% HCT 6 0.32% RAS 6 0.32% CPD/CYP90A1 6 0.32% SQS/FDFT1 6 0.32% GGPPS 5 0.27% FPPS 5 0.27% 7DLH 4 0.22% ISY 4 0.22% CHI 4 0.22% DFR 4 0.22% CPR 4 0.22% DWF1 4 0.22% AACT 4 0.22% COR 3 0.16% XMT_MXMT_DXMT 3 0.16% ANS/LDOX 3 0.16% CCoAOMT 3 0.16% TAT 3 0.16% HMGR 3 0.16% MVK 3 0.16% IDI 3 0.16% 6OMT_4OMT_SOMT 2 0.11% HPPR 2 0.11% SMO1/SMO2 2 0.11% MCT/IspD 2 0.11% MDS/IspF 2 0.11% TYDC_DDC 1 0.05% CYP80B1 1 0.05% CYP719 1 0.05% TDC 1 0.05% ADC 1 0.05% FLS 1 0.05% FK 1 0.05% SQE 1 0.05% DWF5 1 0.05% DWF7 1 0.05% HYD1 1 0.05% CPI1 1 0.05% CMK/IspE 1 0.05% DXS 1 0.05% PMK 1 0.05% MVD 1 0.05% HDR/IspH 1 0.05% GPPS 1 0.05% HMGS 1 0.05% HDS/IspG 1 0.05% DXR 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 180 19 BAHD (72) View species results
Alkaloid pathway 171 18 NMT (36) View species results
Phenylpropanoid pathway 134 11 POD (59) View species results
Flavonoid pathway 83 9 UFGT (38) View species results
Rosmarinic acid pathway 56 7 C4H (27) View species results
Steroid pathway 41 12 SMT1/SMT2/SMT3 (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 786 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 111 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Gene Pathway Family Confidence Status Best Target
gastrodia_menghaiensis_evm.model.scaffold_59.11 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
gastrodia_menghaiensis_evm.model.scaffold_606.14 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
gastrodia_menghaiensis_evm.model.scaffold_64.20.3 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
gastrodia_menghaiensis_evm.model.scaffold_64.63 Phenylpropanoid POD medium pass POD__00026__sp_Q9XEX2_PRX2B_ARATH
gastrodia_menghaiensis_evm.model.scaffold_69.228 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
gastrodia_menghaiensis_evm.model.scaffold_69.327 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
gastrodia_menghaiensis_evm.model.scaffold_69.490 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
gastrodia_menghaiensis_evm.model.scaffold_81.388 Phenylpropanoid POD medium pass POD__00026__sp_Q9XEX2_PRX2B_ARATH
gastrodia_menghaiensis_evm.model.scaffold_89.37 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
gastrodia_menghaiensis_evm.model.scaffold_90.63 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
gastrodia_menghaiensis_evm.model.scaffold_944.22 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH