Gastrodia menghaiensis (gastrodia_menghaiensis)
Imported from atlas release summary for Gastrodia menghaiensis.
881
Candidate Protein Records
665
Pathway-Level Records
1851
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1851
Family-Level Calls
C4H
7.08%
C3'H/CYP98A
6.32%
BAHD
5.35%
T3O
4.27%
4CL
4.05%
IFS
4.0%
CYP76
3.35%
POD
3.3%
Other Families
62.29%
More Families (96)
NMT
55
2.97%
CYP71
55
2.97%
F3'H/CYP75B
46
2.49%
STR
44
2.38%
UFGT
44
2.38%
UGT
42
2.27%
7DLGT
41
2.22%
F3H
40
2.16%
DWF4/CYP90B1
39
2.11%
BR6OX2/CYP85A2
35
1.89%
CAD
34
1.84%
PYKS
30
1.62%
CAS
25
1.35%
TPS
24
1.3%
GES
23
1.24%
SMT1/SMT2/SMT3
23
1.24%
CYP90D1
22
1.19%
GS
21
1.13%
G8O/G8H
20
1.08%
CHS
20
1.08%
COMT
20
1.08%
SLS
18
0.97%
CODM/T6ODM
18
0.97%
IFR
18
0.97%
FNS
18
0.97%
H6H
17
0.92%
T16H
15
0.81%
TRI/TRII
15
0.81%
16OMT
15
0.81%
F5H/CYP84A
15
0.81%
CYP51G1
15
0.81%
NCS
14
0.76%
LAC
14
0.76%
CSE
13
0.7%
PMT
11
0.59%
LAMT
11
0.59%
SGD
11
0.59%
ANR
11
0.59%
CCR
10
0.54%
CNMT
9
0.49%
F3'5'H/CYP75A
9
0.49%
8HGO
8
0.43%
IO
8
0.43%
DET2
8
0.43%
ROT3/CYP90C1
7
0.38%
BR6OX1/CYP85A1
7
0.38%
BBE
6
0.32%
MPO
6
0.32%
PAL
6
0.32%
HCT
6
0.32%
RAS
6
0.32%
CPD/CYP90A1
6
0.32%
SQS/FDFT1
6
0.32%
GGPPS
5
0.27%
FPPS
5
0.27%
7DLH
4
0.22%
ISY
4
0.22%
CHI
4
0.22%
DFR
4
0.22%
CPR
4
0.22%
DWF1
4
0.22%
AACT
4
0.22%
COR
3
0.16%
XMT_MXMT_DXMT
3
0.16%
ANS/LDOX
3
0.16%
CCoAOMT
3
0.16%
TAT
3
0.16%
HMGR
3
0.16%
MVK
3
0.16%
IDI
3
0.16%
6OMT_4OMT_SOMT
2
0.11%
HPPR
2
0.11%
SMO1/SMO2
2
0.11%
MCT/IspD
2
0.11%
MDS/IspF
2
0.11%
TYDC_DDC
1
0.05%
CYP80B1
1
0.05%
CYP719
1
0.05%
TDC
1
0.05%
ADC
1
0.05%
FLS
1
0.05%
FK
1
0.05%
SQE
1
0.05%
DWF5
1
0.05%
DWF7
1
0.05%
HYD1
1
0.05%
CPI1
1
0.05%
CMK/IspE
1
0.05%
DXS
1
0.05%
PMK
1
0.05%
MVD
1
0.05%
HDR/IspH
1
0.05%
GPPS
1
0.05%
HMGS
1
0.05%
HDS/IspG
1
0.05%
DXR
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 180 | 19 | BAHD (72) | View species results |
| Alkaloid pathway | 171 | 18 | NMT (36) | View species results |
| Phenylpropanoid pathway | 134 | 11 | POD (59) | View species results |
| Flavonoid pathway | 83 | 9 | UFGT (38) | View species results |
| Rosmarinic acid pathway | 56 | 7 | C4H (27) | View species results |
| Steroid pathway | 41 | 12 | SMT1/SMT2/SMT3 (13) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 786 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 111 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| gastrodia_menghaiensis_evm.model.scaffold_58.177 | Phenylpropanoid | POD | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_58.178 | Phenylpropanoid | POD | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_58.451 | Phenylpropanoid | POD | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_59.11 | Phenylpropanoid | POD | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_606.14 | Phenylpropanoid | POD | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_64.20.3 | Phenylpropanoid | POD | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_64.63 | Phenylpropanoid | POD | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_69.228 | Phenylpropanoid | POD | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_69.327 | Phenylpropanoid | POD | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_69.490 | Phenylpropanoid | POD | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_81.388 | Phenylpropanoid | POD | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_89.37 | Phenylpropanoid | POD | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_90.63 | Phenylpropanoid | POD | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_944.22 | Phenylpropanoid | POD | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_116.292 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_116.302 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_126.422 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_127.158 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_127.47_evm.model.scaffold_127.48 | Rosmarinic Acid | 4CL | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_146.233 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_15.61 | Rosmarinic Acid | 4CL | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_160.123 | Rosmarinic Acid | 4CL | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_170.326 | Rosmarinic Acid | 4CL | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_188.260 | Rosmarinic Acid | 4CL | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_210.246 | Rosmarinic Acid | 4CL | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_268.5 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_3.146 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_35.41 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_35.49 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_41.367 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_49.5 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_50.421.1 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_64.80 | Rosmarinic Acid | 4CL | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_69.144.3 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_69.392 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_71.54 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_81.389 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_81.390 | Rosmarinic Acid | 4CL | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_88.3 | Rosmarinic Acid | 4CL | medium | pass |
| gastrodia_menghaiensis_evm.model.scaffold_103.11 | Rosmarinic Acid | C4H | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_1071.57 | Rosmarinic Acid | C4H | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_1071.85 | Rosmarinic Acid | C4H | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_1132.8 | Rosmarinic Acid | C4H | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_116.171 | Rosmarinic Acid | C4H | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_116.346 | Rosmarinic Acid | C4H | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_1167.229 | Rosmarinic Acid | C4H | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_121.235 | Rosmarinic Acid | C4H | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_121.237 | Rosmarinic Acid | C4H | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_121.239 | Rosmarinic Acid | C4H | low | borderline |
| gastrodia_menghaiensis_evm.model.scaffold_121.279 | Rosmarinic Acid | C4H | low | borderline |