PlantSME Plant secondary metabolism enzyme database

Gillenia trifoliata (gillenia_trifoliata)

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Imported from atlas release summary for Gillenia trifoliata.

1130
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.79% Phenylpropanoid pathway 21.86% Alkaloid pathway 21.5% Flavonoid pathway 13.01% Rosmarinic acid pathway 9.2% Steroid pathway 6.64%
Family Distribution
BAHD 5.7% C4H 5.63% C3'H/CYP98A 5.31% POD 3.99% UGT 3.85% IFS 3.77% UFGT 3.7% F3H 3.67%
Other Families 64.39%
More Families (94)
7DLGT 102 3.63% 4CL 99 3.53% CYP76 95 3.38% H6H 80 2.85% T3O 79 2.81% DWF4/CYP90B1 71 2.53% NMT 58 2.07% STR 54 1.92% CODM/T6ODM 41 1.46% F3'H/CYP75B 41 1.46% BR6OX2/CYP85A2 40 1.42% CAS 40 1.42% CAD 38 1.35% LAC 38 1.35% SGD 36 1.28% TRI/TRII 32 1.14% TAT 32 1.14% CYP71 32 1.14% HCT 31 1.1% CSE 31 1.1% SMT1/SMT2/SMT3 31 1.1% T16H 28 1.0% IFR 28 1.0% PYKS 26 0.93% RAS 26 0.93% TPS 23 0.82% GS 21 0.75% LAMT 21 0.75% PAL 21 0.75% BR6OX1/CYP85A1 21 0.75% COMT 20 0.71% G8O/G8H 19 0.68% PMT 19 0.68% SLS 19 0.68% GES 18 0.64% 7DLH 18 0.64% ANR 18 0.64% IO 17 0.61% CPR 17 0.61% CYP90D1 17 0.61% CCR 16 0.57% FPPS 16 0.57% F5H/CYP84A 15 0.53% GGPPS 14 0.5% 16OMT 13 0.46% F3'5'H/CYP75A 13 0.46% COR 12 0.43% NCS 12 0.43% ROT3/CYP90C1 11 0.39% 8HGO 10 0.36% CHS 10 0.36% FNS 10 0.36% CPD/CYP90A1 10 0.36% AACT 10 0.36% DFR 8 0.28% MPO 7 0.25% CNMT 7 0.25% BBE 7 0.25% SQE 7 0.25% ISY 6 0.21% ANS/LDOX 6 0.21% DXS 6 0.21% CYP80B1 5 0.18% CHI 5 0.18% CCoAOMT 5 0.18% SQS/FDFT1 5 0.18% CYP719 4 0.14% TYDC_DDC 4 0.14% HPPR 4 0.14% SMO1/SMO2 4 0.14% CYP51G1 4 0.14% DET2 4 0.14% MVD 4 0.14% TDC 3 0.11% FLS 3 0.11% MVK 3 0.11% MCT/IspD 3 0.11% ADC 2 0.07% HYD1 2 0.07% CPI1 2 0.07% HMGS 2 0.07% CMK/IspE 2 0.07% PMK 2 0.07% HMGR 2 0.07% XMT_MXMT_DXMT 1 0.04% FK 1 0.04% DWF1 1 0.04% DWF7 1 0.04% DWF5 1 0.04% HDR/IspH 1 0.04% DXR 1 0.04% HDS/IspG 1 0.04% IDI 1 0.04% MDS/IspF 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 314 19 BAHD (127) View species results
Phenylpropanoid pathway 247 11 POD (108) View species results
Alkaloid pathway 243 17 7DLGT (46) View species results
Flavonoid pathway 147 8 UFGT (92) View species results
Rosmarinic acid pathway 104 7 C4H (30) View species results
Steroid pathway 75 13 CAS (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 972 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 217 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
Gt00003428 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Gt00005822 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Gt00013528 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Gt00015162 Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
Gt00018473 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Gt00019761 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Gt00023440 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Gt00025205 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Gt00030757 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Gt00030809 Phenylpropanoid CCR low borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Gt00030859 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Gt00033025 Phenylpropanoid CCR low borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Gt00033547 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Gt00034167 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Gt00035810 Phenylpropanoid CCR medium pass CCR__00008__sp_Q9S9N9_CCR1_ARATH
Gt00036430 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY