PlantSME Plant secondary metabolism enzyme database

Gillenia trifoliata (gillenia_trifoliata)

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Imported from atlas release summary for Gillenia trifoliata.

1423
Candidate Protein Records
1130
Pathway-Level Records
2808
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 27.79% Phenylpropanoid pathway 21.86% Alkaloid pathway 21.5% Flavonoid pathway 13.01% Rosmarinic acid pathway 9.2% Steroid pathway 6.64%
Family Distribution
BAHD 5.7% C4H 5.63% C3'H/CYP98A 5.31% POD 3.99% UGT 3.85% IFS 3.77% UFGT 3.7% F3H 3.67%
Other Families 64.39%
More Families (94)
7DLGT 102 3.63% 4CL 99 3.53% CYP76 95 3.38% H6H 80 2.85% T3O 79 2.81% DWF4/CYP90B1 71 2.53% NMT 58 2.07% STR 54 1.92% CODM/T6ODM 41 1.46% F3'H/CYP75B 41 1.46% BR6OX2/CYP85A2 40 1.42% CAS 40 1.42% CAD 38 1.35% LAC 38 1.35% SGD 36 1.28% TRI/TRII 32 1.14% TAT 32 1.14% CYP71 32 1.14% HCT 31 1.1% CSE 31 1.1% SMT1/SMT2/SMT3 31 1.1% T16H 28 1.0% IFR 28 1.0% PYKS 26 0.93% RAS 26 0.93% TPS 23 0.82% GS 21 0.75% LAMT 21 0.75% PAL 21 0.75% BR6OX1/CYP85A1 21 0.75% COMT 20 0.71% G8O/G8H 19 0.68% PMT 19 0.68% SLS 19 0.68% GES 18 0.64% 7DLH 18 0.64% ANR 18 0.64% IO 17 0.61% CPR 17 0.61% CYP90D1 17 0.61% CCR 16 0.57% FPPS 16 0.57% F5H/CYP84A 15 0.53% GGPPS 14 0.5% 16OMT 13 0.46% F3'5'H/CYP75A 13 0.46% COR 12 0.43% NCS 12 0.43% ROT3/CYP90C1 11 0.39% 8HGO 10 0.36% CHS 10 0.36% FNS 10 0.36% CPD/CYP90A1 10 0.36% AACT 10 0.36% DFR 8 0.28% MPO 7 0.25% CNMT 7 0.25% BBE 7 0.25% SQE 7 0.25% ISY 6 0.21% ANS/LDOX 6 0.21% DXS 6 0.21% CYP80B1 5 0.18% CHI 5 0.18% CCoAOMT 5 0.18% SQS/FDFT1 5 0.18% CYP719 4 0.14% TYDC_DDC 4 0.14% HPPR 4 0.14% SMO1/SMO2 4 0.14% CYP51G1 4 0.14% DET2 4 0.14% MVD 4 0.14% TDC 3 0.11% FLS 3 0.11% MVK 3 0.11% MCT/IspD 3 0.11% ADC 2 0.07% HYD1 2 0.07% CPI1 2 0.07% HMGS 2 0.07% CMK/IspE 2 0.07% PMK 2 0.07% HMGR 2 0.07% XMT_MXMT_DXMT 1 0.04% FK 1 0.04% DWF1 1 0.04% DWF7 1 0.04% DWF5 1 0.04% HDR/IspH 1 0.04% DXR 1 0.04% HDS/IspG 1 0.04% IDI 1 0.04% MDS/IspF 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 314 19 BAHD (127) View species results
Phenylpropanoid pathway 247 11 POD (108) View species results
Alkaloid pathway 243 17 7DLGT (46) View species results
Flavonoid pathway 147 8 UFGT (92) View species results
Rosmarinic acid pathway 104 7 C4H (30) View species results
Steroid pathway 75 13 CAS (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 972 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 217 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Gt00032390 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Gt00033076 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Gt00036170 Alkaloid NMT low borderline NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Gt00037738 Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
Gt00038835 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Gt00039471 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Gt00039584 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Gt00039769 Alkaloid NMT low borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT