PlantSME Plant secondary metabolism enzyme database

Glebionis coronaria (glebionis_coronaria)

Imported from atlas release summary for Glebionis coronaria.

2910
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.75% Phenylpropanoid pathway 21.75% Alkaloid pathway 20.03% Flavonoid pathway 11.34% Rosmarinic acid pathway 9.24% Steroid pathway 5.88%
Family Distribution
BAHD 7.21% C4H 5.85% C3'H/CYP98A 5.58% UGT 4.31% CYP76 4.0% POD 3.87% IFS 3.76% 7DLGT 3.5%
Other Families 61.91%
More Families (97)
4CL 249 3.32% UFGT 236 3.15% F3H 220 2.94% T3O 209 2.79% NMT 182 2.43% BR6OX2/CYP85A2 152 2.03% CODM/T6ODM 145 1.94% H6H 123 1.64% TAT 122 1.63% DWF4/CYP90B1 122 1.63% STR 121 1.62% SMT1/SMT2/SMT3 121 1.62% F3'H/CYP75B 114 1.52% HCT 111 1.48% CAS 98 1.31% TPS 97 1.29% G8O/G8H 94 1.25% CAD 94 1.25% GES 87 1.16% LAC 80 1.07% CYP71 78 1.04% TRI/TRII 72 0.96% CSE 72 0.96% RAS 64 0.85% GS 63 0.84% COMT 60 0.8% PYKS 58 0.77% IFR 56 0.75% T16H 55 0.73% CYP90D1 54 0.72% F3'5'H/CYP75A 53 0.71% SLS 50 0.67% SGD 47 0.63% ANS/LDOX 44 0.59% FNS 44 0.59% NCS 42 0.56% CPD/CYP90A1 42 0.56% ANR 37 0.49% 16OMT 36 0.48% 7DLH 36 0.48% BR6OX1/CYP85A1 36 0.48% F5H/CYP84A 33 0.44% PMT 32 0.43% BBE 29 0.39% FPPS 29 0.39% IO 28 0.37% 8HGO 27 0.36% COR 26 0.35% CCoAOMT 23 0.31% SQS/FDFT1 22 0.29% LAMT 21 0.28% PAL 21 0.28% CPR 21 0.28% CNMT 20 0.27% CYP80B1 20 0.27% FLS 20 0.27% CHS 20 0.27% CCR 20 0.27% ROT3/CYP90C1 20 0.27% CHI 19 0.25% HPPR 19 0.25% CYP719 17 0.23% CYP51G1 17 0.23% AACT 16 0.21% ISY 15 0.2% MPO 15 0.2% DFR 15 0.2% HMGR 15 0.2% HDR/IspH 15 0.2% XMT_MXMT_DXMT 12 0.16% PMK 12 0.16% GGPPS 12 0.16% SMO1/SMO2 11 0.15% TYDC_DDC 10 0.13% DWF1 10 0.13% SQE 9 0.12% MVD 9 0.12% 6OMT_4OMT_SOMT 8 0.11% TDC 8 0.11% MCT/IspD 8 0.11% HMGS 8 0.11% DET2 5 0.07% DXS 5 0.07% MVK 5 0.07% GPPS 5 0.07% ADC 4 0.05% DXR 4 0.05% HDS/IspG 4 0.05% DWF7 3 0.04% IDI 3 0.04% CYP80F1 2 0.03% DWF5 2 0.03% HYD1 2 0.03% MDS/IspF 2 0.03% CMK/IspE 2 0.03% CPI1 1 0.01% FK 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 924 21 BAHD (361) View species results
Phenylpropanoid pathway 633 13 POD (262) View species results
Alkaloid pathway 583 22 7DLGT (115) View species results
Flavonoid pathway 330 12 UFGT (211) View species results
Rosmarinic acid pathway 269 7 C4H (83) View species results
Steroid pathway 171 13 SMT1/SMT2/SMT3 (68) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2670 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 715 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status Best Target
glebionis_coronaria_Gcor.h2tg000241l.g392.t1 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI
glebionis_coronaria_Gcor.h2tg000424l.g20.t1 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI
glebionis_coronaria_Gcor.h2tg000652l.g199.t1 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI
glebionis_coronaria_Gcor.h2tg000792l.g108.t1 Steroid DET2 medium pass DET2__00002__sp_Q2QDF6_DET2_GOSHI
glebionis_coronaria_Gcor.h2tg001457l.g17.t1 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI