PlantSME Plant secondary metabolism enzyme database

Glycine soja (glycine_soja)

Imported from atlas release summary for Glycine soja.

3766
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.34% Phenylpropanoid pathway 23.92% Alkaloid pathway 22.81% Flavonoid pathway 11.55% Rosmarinic acid pathway 7.75% Steroid pathway 7.62%
Family Distribution
BAHD 6.34% 4CL 5.35% C3'H/CYP98A 5.04% C4H 4.93% POD 4.74% NMT 3.61% UGT 3.6% IFS 3.29%
Other Families 63.11%
More Families (98)
UFGT 287 3.2% 7DLGT 284 3.17% CYP76 272 3.03% T3O 270 3.01% F3H 262 2.92% STR 198 2.21% DWF4/CYP90B1 178 1.98% SMT1/SMT2/SMT3 171 1.91% CODM/T6ODM 163 1.82% F3'H/CYP75B 154 1.72% H6H 139 1.55% CAD 139 1.55% CYP71 139 1.55% CAS 132 1.47% BR6OX2/CYP85A2 115 1.28% LAC 114 1.27% SGD 111 1.24% TRI/TRII 107 1.19% CSE 101 1.13% IFR 97 1.08% CYP90D1 93 1.04% COMT 87 0.97% GS 79 0.88% HCT 77 0.86% PMT 68 0.76% RAS 68 0.76% T16H 64 0.71% ANR 64 0.71% CCR 59 0.66% PYKS 57 0.64% COR 57 0.64% BBE 54 0.6% TPS 52 0.58% 8HGO 50 0.56% IO 50 0.56% 16OMT 50 0.56% GES 50 0.56% SLS 47 0.52% CPR 47 0.52% 7DLH 46 0.51% G8O/G8H 45 0.5% BR6OX1/CYP85A1 43 0.48% ANS/LDOX 40 0.45% FNS 40 0.45% MPO 39 0.43% TAT 36 0.4% NCS 35 0.39% CPD/CYP90A1 35 0.39% LAMT 34 0.38% F3'5'H/CYP75A 33 0.37% DFR 33 0.37% F5H/CYP84A 33 0.37% CNMT 32 0.36% SQS/FDFT1 29 0.32% DXS 29 0.32% PAL 27 0.3% ROT3/CYP90C1 27 0.3% CCoAOMT 25 0.28% CYP51G1 25 0.28% AACT 25 0.28% CHS 22 0.25% HPPR 19 0.21% SQE 19 0.21% TDC 18 0.2% MVD 18 0.2% SMO1/SMO2 17 0.19% CYP719 16 0.18% GGPPS 14 0.16% FPPS 14 0.16% ADC 13 0.14% DET2 13 0.14% DWF1 13 0.14% MVK 13 0.14% CHI 12 0.13% HMGS 11 0.12% HMGR 10 0.11% DXR 10 0.11% FLS 9 0.1% ISY 8 0.09% TYDC_DDC 7 0.08% CYP80B1 7 0.08% MCT/IspD 7 0.08% DWF7 6 0.07% HDR/IspH 6 0.07% HDS/IspG 6 0.07% XMT_MXMT_DXMT 5 0.06% CPI1 4 0.04% HYD1 4 0.04% 6OMT_4OMT_SOMT 3 0.03% CYP80F1 3 0.03% DWF5 3 0.03% GPPS 3 0.03% IDI 3 0.03% CMK/IspE 3 0.03% ODC 2 0.02% FK 2 0.02% PMK 2 0.02% MDS/IspF 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 992 20 BAHD (438) View species results
Phenylpropanoid pathway 901 12 POD (400) View species results
Alkaloid pathway 859 24 NMT (189) View species results
Flavonoid pathway 435 11 UFGT (255) View species results
Rosmarinic acid pathway 292 7 C4H (90) View species results
Steroid pathway 287 13 CAS (118) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2884 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 714 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
Gsoj02G0019810.1 Terpenoid FPPS medium borderline FPPS__00005__sp_P34802_GGPP1_ARATH
Gsoj02G0022430.3 Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Gsoj04G0017450.1 Terpenoid FPPS medium pass FPPS__00006__sp_P49350_FPPS_ARTAN
Gsoj09G0001430.1 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
Gsoj09G0019680.1 Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Gsoj11G0021130.1 Terpenoid FPPS low borderline FPPS__00008__sp_Q4JHN6_FPS_PANGI
Gsoj11G0039210.1 Terpenoid FPPS medium borderline FPPS__00007__sp_P80042_GGPPS_CAPAN
Gsoj14G0002270.1 Terpenoid FPPS medium borderline FPPS__00005__sp_P34802_GGPP1_ARATH
Gsoj14G0019900.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Gsoj14G0019910.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Gsoj15G0011590.1 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
Gsoj16G0011810.1 Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Gsoj16G0011840.1 Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Gsoj20G0004580.1 Terpenoid FPPS medium pass FPPS__00006__sp_P49350_FPPS_ARTAN