Glycine soja (glycine_soja)
Imported from atlas release summary for Glycine soja.
3766
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3766
Candidate Genes
BAHD
6.34%
4CL
5.35%
C3'H/CYP98A
5.04%
C4H
4.93%
POD
4.74%
NMT
3.61%
UGT
3.6%
IFS
3.29%
Other Families
63.11%
More Families (98)
UFGT
287
3.2%
7DLGT
284
3.17%
CYP76
272
3.03%
T3O
270
3.01%
F3H
262
2.92%
STR
198
2.21%
DWF4/CYP90B1
178
1.98%
SMT1/SMT2/SMT3
171
1.91%
CODM/T6ODM
163
1.82%
F3'H/CYP75B
154
1.72%
H6H
139
1.55%
CAD
139
1.55%
CYP71
139
1.55%
CAS
132
1.47%
BR6OX2/CYP85A2
115
1.28%
LAC
114
1.27%
SGD
111
1.24%
TRI/TRII
107
1.19%
CSE
101
1.13%
IFR
97
1.08%
CYP90D1
93
1.04%
COMT
87
0.97%
GS
79
0.88%
HCT
77
0.86%
PMT
68
0.76%
RAS
68
0.76%
T16H
64
0.71%
ANR
64
0.71%
CCR
59
0.66%
PYKS
57
0.64%
COR
57
0.64%
BBE
54
0.6%
TPS
52
0.58%
8HGO
50
0.56%
IO
50
0.56%
16OMT
50
0.56%
GES
50
0.56%
SLS
47
0.52%
CPR
47
0.52%
7DLH
46
0.51%
G8O/G8H
45
0.5%
BR6OX1/CYP85A1
43
0.48%
ANS/LDOX
40
0.45%
FNS
40
0.45%
MPO
39
0.43%
TAT
36
0.4%
NCS
35
0.39%
CPD/CYP90A1
35
0.39%
LAMT
34
0.38%
F3'5'H/CYP75A
33
0.37%
DFR
33
0.37%
F5H/CYP84A
33
0.37%
CNMT
32
0.36%
SQS/FDFT1
29
0.32%
DXS
29
0.32%
PAL
27
0.3%
ROT3/CYP90C1
27
0.3%
CCoAOMT
25
0.28%
CYP51G1
25
0.28%
AACT
25
0.28%
CHS
22
0.25%
HPPR
19
0.21%
SQE
19
0.21%
TDC
18
0.2%
MVD
18
0.2%
SMO1/SMO2
17
0.19%
CYP719
16
0.18%
GGPPS
14
0.16%
FPPS
14
0.16%
ADC
13
0.14%
DET2
13
0.14%
DWF1
13
0.14%
MVK
13
0.14%
CHI
12
0.13%
HMGS
11
0.12%
HMGR
10
0.11%
DXR
10
0.11%
FLS
9
0.1%
ISY
8
0.09%
TYDC_DDC
7
0.08%
CYP80B1
7
0.08%
MCT/IspD
7
0.08%
DWF7
6
0.07%
HDR/IspH
6
0.07%
HDS/IspG
6
0.07%
XMT_MXMT_DXMT
5
0.06%
CPI1
4
0.04%
HYD1
4
0.04%
6OMT_4OMT_SOMT
3
0.03%
CYP80F1
3
0.03%
DWF5
3
0.03%
GPPS
3
0.03%
IDI
3
0.03%
CMK/IspE
3
0.03%
ODC
2
0.02%
FK
2
0.02%
PMK
2
0.02%
MDS/IspF
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 992 | 20 | BAHD (438) | View species results |
| Phenylpropanoid pathway | 901 | 12 | POD (400) | View species results |
| Alkaloid pathway | 859 | 24 | NMT (189) | View species results |
| Flavonoid pathway | 435 | 11 | UFGT (255) | View species results |
| Rosmarinic acid pathway | 292 | 7 | C4H (90) | View species results |
| Steroid pathway | 287 | 13 | CAS (118) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2884 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 714 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Gsoj15G0001870.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj15G0002830.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gsoj15G0017860.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj15G0023780.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj16G0007380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj16G0007380.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj16G0008870.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gsoj16G0010940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj16G0020620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj16G0020620.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj16G0020620.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj16G0020620.4 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj17G0003740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj17G0003740.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj17G0003740.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj17G0003750.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj17G0003750.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj17G0003750.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj17G0008070.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gsoj17G0011590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj17G0020410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj17G0020430.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj17G0020430.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj17G0020430.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj18G0006220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj18G0007220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj18G0015080.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj19G0013520.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gsoj19G0014040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj19G0014040.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj19G0014040.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj19G0017160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj19G0017170.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj19G0017180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj19G0017800.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj19G0019420.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj19G0020490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj20G0003900.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj20G0012600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj20G0012600.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj20G0016390.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj20G0017460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj20G0018110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj20G0018420.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj20G0018650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj20G0018650.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsoj20G0023850.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gsojglyso.W05.gnm1.tig00104511_1_pilon_84547_12567230002620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |