PlantSME Plant secondary metabolism enzyme database

Gossypium rotundifolium (gossypium_rotundifolium)

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Imported from atlas release summary for Gossypium rotundifolium.

1825
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.59% Alkaloid pathway 22.41% Phenylpropanoid pathway 22.36% Flavonoid pathway 12.49% Rosmarinic acid pathway 7.07% Steroid pathway 6.08%
Family Distribution
C4H 6.88% C3'H/CYP98A 5.71% BAHD 5.32% UGT 3.89% 4CL 3.78% 7DLGT 3.76% UFGT 3.71% POD 3.63%
Other Families 63.33%
More Families (97)
IFS 166 3.6% CYP76 166 3.6% T3O 157 3.41% F3H 152 3.3% STR 93 2.02% DWF4/CYP90B1 93 2.02% NMT 91 1.98% F3'H/CYP75B 87 1.89% BR6OX2/CYP85A2 86 1.87% H6H 78 1.69% CODM/T6ODM 75 1.63% LAC 70 1.52% CAD 67 1.45% CAS 66 1.43% TRI/TRII 62 1.35% CYP71 61 1.32% GES 55 1.19% TPS 54 1.17% SMT1/SMT2/SMT3 52 1.13% CYP90D1 51 1.11% 7DLH 49 1.06% CSE 49 1.06% IO 46 1.0% BBE 45 0.98% HCT 45 0.98% GS 42 0.91% COMT 40 0.87% NCS 37 0.8% RAS 37 0.8% PYKS 36 0.78% IFR 33 0.72% CPD/CYP90A1 29 0.63% 16OMT 28 0.61% PAL 27 0.59% ANR 27 0.59% PMT 25 0.54% CCR 25 0.54% BR6OX1/CYP85A1 24 0.52% T16H 23 0.5% F3'5'H/CYP75A 23 0.5% SGD 22 0.48% F5H/CYP84A 22 0.48% TAT 22 0.48% G8O/G8H 21 0.46% FNS 21 0.46% SLS 20 0.43% COR 19 0.41% ANS/LDOX 17 0.37% CYP51G1 16 0.35% 8HGO 15 0.33% CNMT 15 0.33% GGPPS 14 0.3% FPPS 13 0.28% DFR 12 0.26% SQE 11 0.24% SMO1/SMO2 11 0.24% ROT3/CYP90C1 11 0.24% LAMT 10 0.22% CCoAOMT 10 0.22% HMGR 10 0.22% CHS 8 0.17% MPO 7 0.15% XMT_MXMT_DXMT 7 0.15% CPR 7 0.15% SQS/FDFT1 7 0.15% CYP80B1 6 0.13% TYDC_DDC 6 0.13% AACT 6 0.13% HPPR 5 0.11% DET2 5 0.11% MVK 5 0.11% MVD 5 0.11% DXS 5 0.11% ADC 4 0.09% CYP719 4 0.09% CHI 4 0.09% ODC 3 0.07% ISY 3 0.07% FLS 3 0.07% DWF5 3 0.07% MCT/IspD 3 0.07% DXR 3 0.07% TDC 2 0.04% FK 2 0.04% DWF1 2 0.04% DWF7 2 0.04% MDS/IspF 2 0.04% HDR/IspH 2 0.04% GPPS 2 0.04% HMGS 2 0.04% PMK 2 0.04% CYP80F1 1 0.02% CPI1 1 0.02% HYD1 1 0.02% CMK/IspE 1 0.02% IDI 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 540 21 BAHD (195) View species results
Alkaloid pathway 409 22 7DLGT (74) View species results
Phenylpropanoid pathway 408 12 POD (162) View species results
Flavonoid pathway 228 11 UFGT (150) View species results
Rosmarinic acid pathway 129 7 C4H (42) View species results
Steroid pathway 111 11 CAS (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1742 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 327 BAHD, HCT, RAS
Identification Result List
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Gene Pathway Family Confidence Status
gossypium_rotundifolium_Grot_01G002000.1 Flavonoid FLS low borderline
gossypium_rotundifolium_Grot_01G002020.1 Flavonoid FLS low borderline
gossypium_rotundifolium_Grot_01G002030.1 Flavonoid FLS low borderline