Gossypium rotundifolium (gossypium_rotundifolium)
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Imported from atlas release summary for Gossypium rotundifolium.
1825
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1825
Candidate Genes
C4H
6.88%
C3'H/CYP98A
5.71%
BAHD
5.32%
UGT
3.89%
4CL
3.78%
7DLGT
3.76%
UFGT
3.71%
POD
3.63%
Other Families
63.33%
More Families (97)
IFS
166
3.6%
CYP76
166
3.6%
T3O
157
3.41%
F3H
152
3.3%
STR
93
2.02%
DWF4/CYP90B1
93
2.02%
NMT
91
1.98%
F3'H/CYP75B
87
1.89%
BR6OX2/CYP85A2
86
1.87%
H6H
78
1.69%
CODM/T6ODM
75
1.63%
LAC
70
1.52%
CAD
67
1.45%
CAS
66
1.43%
TRI/TRII
62
1.35%
CYP71
61
1.32%
GES
55
1.19%
TPS
54
1.17%
SMT1/SMT2/SMT3
52
1.13%
CYP90D1
51
1.11%
7DLH
49
1.06%
CSE
49
1.06%
IO
46
1.0%
BBE
45
0.98%
HCT
45
0.98%
GS
42
0.91%
COMT
40
0.87%
NCS
37
0.8%
RAS
37
0.8%
PYKS
36
0.78%
IFR
33
0.72%
CPD/CYP90A1
29
0.63%
16OMT
28
0.61%
PAL
27
0.59%
ANR
27
0.59%
PMT
25
0.54%
CCR
25
0.54%
BR6OX1/CYP85A1
24
0.52%
T16H
23
0.5%
F3'5'H/CYP75A
23
0.5%
SGD
22
0.48%
F5H/CYP84A
22
0.48%
TAT
22
0.48%
G8O/G8H
21
0.46%
FNS
21
0.46%
SLS
20
0.43%
COR
19
0.41%
ANS/LDOX
17
0.37%
CYP51G1
16
0.35%
8HGO
15
0.33%
CNMT
15
0.33%
GGPPS
14
0.3%
FPPS
13
0.28%
DFR
12
0.26%
SQE
11
0.24%
SMO1/SMO2
11
0.24%
ROT3/CYP90C1
11
0.24%
LAMT
10
0.22%
CCoAOMT
10
0.22%
HMGR
10
0.22%
CHS
8
0.17%
MPO
7
0.15%
XMT_MXMT_DXMT
7
0.15%
CPR
7
0.15%
SQS/FDFT1
7
0.15%
CYP80B1
6
0.13%
TYDC_DDC
6
0.13%
AACT
6
0.13%
HPPR
5
0.11%
DET2
5
0.11%
MVK
5
0.11%
MVD
5
0.11%
DXS
5
0.11%
ADC
4
0.09%
CYP719
4
0.09%
CHI
4
0.09%
ODC
3
0.07%
ISY
3
0.07%
FLS
3
0.07%
DWF5
3
0.07%
MCT/IspD
3
0.07%
DXR
3
0.07%
TDC
2
0.04%
FK
2
0.04%
DWF1
2
0.04%
DWF7
2
0.04%
MDS/IspF
2
0.04%
HDR/IspH
2
0.04%
GPPS
2
0.04%
HMGS
2
0.04%
PMK
2
0.04%
CYP80F1
1
0.02%
CPI1
1
0.02%
HYD1
1
0.02%
CMK/IspE
1
0.02%
IDI
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 540 | 21 | BAHD (195) | View species results |
| Alkaloid pathway | 409 | 22 | 7DLGT (74) | View species results |
| Phenylpropanoid pathway | 408 | 12 | POD (162) | View species results |
| Flavonoid pathway | 228 | 11 | UFGT (150) | View species results |
| Rosmarinic acid pathway | 129 | 7 | C4H (42) | View species results |
| Steroid pathway | 111 | 11 | CAS (52) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1742 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 327 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| gossypium_rotundifolium_Grot_09G013850.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_rotundifolium_Grot_09G014560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_09G014860.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_09G015320.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_09G016530.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_09G017480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_09G024410.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_rotundifolium_Grot_09G024920.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_rotundifolium_Grot_10G003730.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_10G007070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_10G020980.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_10G021690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_10G021720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_11G001660.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_11G004010.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_rotundifolium_Grot_11G013030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_11G014700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_11G014720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_11G015570.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_11G028210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_11G028220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_12G003180.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_12G004760.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_rotundifolium_Grot_12G024570.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_12G032030.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_13G000510.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_13G004160.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_rotundifolium_Grot_13G017670.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_13G034200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_13G035100.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_13G035110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_13G035130.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_13G035140.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_13G036080.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_13G039590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_13G044840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_Contig01595G000010.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_rotundifolium_Grot_Contig02286G000050.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| gossypium_rotundifolium_Grot_Contig02332G000010.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_rotundifolium_Grot_Contig02332G000020.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_rotundifolium_Grot_Contig02332G000030.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| gossypium_rotundifolium_Grot_Contig02464G000010.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_rotundifolium_Grot_Contig02818G000010.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |