PlantSME Plant secondary metabolism enzyme database

Hordeum marinum (hordeum_marinum)

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Imported from atlas release summary for Hordeum marinum.

2233
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.14% Phenylpropanoid pathway 23.91% Alkaloid pathway 21.9% Flavonoid pathway 14.24% Rosmarinic acid pathway 8.55% Steroid pathway 4.25%
Family Distribution
C3'H/CYP98A 6.8% C4H 6.79% POD 5.05% BAHD 5.05% UGT 4.51% T3O 4.08% 7DLGT 4.07% UFGT 3.92%
Other Families 59.72%
More Families (97)
CYP76 205 3.62% IFS 201 3.55% F3'H/CYP75B 155 2.74% 4CL 144 2.55% DWF4/CYP90B1 141 2.49% BR6OX2/CYP85A2 141 2.49% F3H 138 2.44% CYP71 113 2.0% NMT 83 1.47% CODM/T6ODM 73 1.29% PYKS 71 1.25% STR 71 1.25% H6H 70 1.24% SMT1/SMT2/SMT3 70 1.24% CAD 68 1.2% CSE 66 1.17% LAC 56 0.99% TPS 54 0.95% PMT 53 0.94% COMT 53 0.94% CYP90D1 53 0.94% PAL 51 0.9% G8O/G8H 49 0.87% SLS 49 0.87% GES 48 0.85% TRI/TRII 48 0.85% T16H 46 0.81% ANR 46 0.81% CCR 46 0.81% CAS 45 0.8% RAS 43 0.76% 16OMT 42 0.74% FNS 42 0.74% HCT 42 0.74% BBE 37 0.65% SGD 35 0.62% CHS 34 0.6% IO 32 0.57% IFR 32 0.57% CYP51G1 32 0.57% GS 30 0.53% F3'5'H/CYP75A 28 0.49% BR6OX1/CYP85A1 28 0.49% NCS 26 0.46% DFR 25 0.44% TYDC_DDC 23 0.41% F5H/CYP84A 23 0.41% COR 21 0.37% CPD/CYP90A1 21 0.37% CNMT 20 0.35% CYP719 17 0.3% 7DLH 16 0.28% 6OMT_4OMT_SOMT 16 0.28% 8HGO 15 0.27% HPPR 11 0.19% LAMT 10 0.18% TAT 10 0.18% AACT 9 0.16% FPPS 9 0.16% TDC 8 0.14% ANS/LDOX 8 0.14% MPO 7 0.12% CPR 7 0.12% SQS/FDFT1 7 0.12% ISY 6 0.11% ROT3/CYP90C1 6 0.11% SMO1/SMO2 6 0.11% GGPPS 6 0.11% MVD 6 0.11% XMT_MXMT_DXMT 5 0.09% ODC 5 0.09% CCoAOMT 5 0.09% MVK 5 0.09% ADC 4 0.07% CYP80B1 3 0.05% CHI 3 0.05% FLS 3 0.05% DWF1 3 0.05% HYD1 3 0.05% DET2 3 0.05% SQE 3 0.05% DXS 3 0.05% IDI 3 0.05% HDR/IspH 3 0.05% HMGS 3 0.05% HMGR 3 0.05% CYP80F1 2 0.04% FK 2 0.04% CPI1 2 0.04% CMK/IspE 2 0.04% MDS/IspF 2 0.04% DWF7 1 0.02% DWF5 1 0.02% MCT/IspD 1 0.02% DXR 1 0.02% PMK 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 606 18 UGT (239) View species results
Phenylpropanoid pathway 534 12 POD (270) View species results
Alkaloid pathway 489 22 7DLGT (117) View species results
Flavonoid pathway 318 13 UFGT (213) View species results
Rosmarinic acid pathway 191 7 C4H (107) View species results
Steroid pathway 95 13 SMT1/SMT2/SMT3 (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2361 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
hordeum_marinum_GWHPBJBH053558 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
hordeum_marinum_GWHPBJBH054198 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
hordeum_marinum_GWHPBJBH055832 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
hordeum_marinum_GWHPBJBH056502 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
hordeum_marinum_GWHPBJBH057272 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
hordeum_marinum_GWHPBJBH061718 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
hordeum_marinum_GWHPBJBH063522 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
hordeum_marinum_GWHPBJBH063578 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
hordeum_marinum_GWHPBJBH064879 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
hordeum_marinum_GWHPBJBH064906 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
hordeum_marinum_GWHPBJBH064914 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
hordeum_marinum_GWHPBJBH064920 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
hordeum_marinum_GWHPBJBH065924 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
hordeum_marinum_GWHPBJBH067593 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
hordeum_marinum_GWHPBJBH069305 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
hordeum_marinum_GWHPBJBH069924 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
hordeum_marinum_GWHPBJBH070110 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
hordeum_marinum_GWHPBJBH070344 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
hordeum_marinum_GWHPBJBH070346 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
hordeum_marinum_GWHPBJBH071984 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
hordeum_marinum_GWHPBJBH073885 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR