PlantSME Plant secondary metabolism enzyme database

Iochroma cyaneum (iochroma_cyaneum)

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Imported from atlas release summary for Iochroma cyaneum.

2741
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.92% Alkaloid pathway 22.77% Phenylpropanoid pathway 16.64% Flavonoid pathway 13.61% Rosmarinic acid pathway 10.36% Steroid pathway 4.71%
Family Distribution
C4H 7.34% C3'H/CYP98A 6.55% UGT 4.67% BAHD 4.54% T3O 4.26% 7DLGT 4.13% UFGT 4.08% IFS 3.92%
Other Families 60.5%
More Families (98)
CYP76 263 3.7% POD 210 2.95% 4CL 204 2.87% F3H 200 2.81% F3'H/CYP75B 187 2.63% DWF4/CYP90B1 187 2.63% TPS 182 2.56% GES 171 2.4% CYP71 166 2.33% BR6OX2/CYP85A2 143 2.01% CAD 136 1.91% H6H 116 1.63% CODM/T6ODM 109 1.53% NMT 99 1.39% STR 96 1.35% TRI/TRII 78 1.1% TAT 76 1.07% CAS 76 1.07% SMT1/SMT2/SMT3 72 1.01% CYP90D1 60 0.84% CSE 58 0.82% T16H 57 0.8% LAC 55 0.77% G8O/G8H 54 0.76% HCT 49 0.69% CYP51G1 49 0.69% BBE 48 0.67% 7DLH 47 0.66% F5H/CYP84A 46 0.65% SLS 45 0.63% PYKS 45 0.63% FNS 42 0.59% F3'5'H/CYP75A 42 0.59% COMT 42 0.59% IO 40 0.56% LAMT 39 0.55% GS 37 0.52% PMT 34 0.48% ANR 34 0.48% IFR 34 0.48% 16OMT 32 0.45% CPD/CYP90A1 30 0.42% SGD 29 0.41% RAS 29 0.41% BR6OX1/CYP85A1 26 0.37% CCR 24 0.34% NCS 23 0.32% ROT3/CYP90C1 21 0.3% TYDC_DDC 18 0.25% PAL 18 0.25% FPPS 18 0.25% CYP80B1 17 0.24% 8HGO 17 0.24% ANS/LDOX 17 0.24% CNMT 16 0.22% CHS 15 0.21% CCoAOMT 15 0.21% COR 12 0.17% SQS/FDFT1 12 0.17% GGPPS 11 0.15% CYP719 10 0.14% DFR 10 0.14% CPR 10 0.14% HPPR 10 0.14% AACT 10 0.14% XMT_MXMT_DXMT 9 0.13% ODC 8 0.11% MVK 8 0.11% 6OMT_4OMT_SOMT 7 0.1% MPO 7 0.1% SQE 7 0.1% TDC 5 0.07% ISY 5 0.07% FLS 5 0.07% HMGR 5 0.07% MVD 5 0.07% ADC 4 0.06% DWF1 4 0.06% DET2 4 0.06% SMO1/SMO2 4 0.06% DXS 4 0.06% IDI 4 0.06% HMGS 4 0.06% CHI 3 0.04% DWF7 3 0.04% GPPS 3 0.04% CYP80F1 2 0.03% DWF5 2 0.03% CMK/IspE 2 0.03% PMK 2 0.03% HDR/IspH 2 0.03% HYD1 1 0.01% CPI1 1 0.01% FK 1 0.01% HDS/IspG 1 0.01% DXR 1 0.01% MCT/IspD 1 0.01% MDS/IspF 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 875 21 UGT (310) View species results
Alkaloid pathway 624 26 GES (156) View species results
Phenylpropanoid pathway 456 12 POD (196) View species results
Flavonoid pathway 373 11 UFGT (268) View species results
Rosmarinic acid pathway 284 7 C4H (152) View species results
Steroid pathway 129 14 CAS (55) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3062 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
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Gene Pathway Family Confidence Status Best Target
iochroma_cyaneum_scaffold20593s005020.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
iochroma_cyaneum_scaffold20678s005020.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
iochroma_cyaneum_scaffold20684s005010.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
iochroma_cyaneum_scaffold20684s005020.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
iochroma_cyaneum_scaffold20684s005030.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
iochroma_cyaneum_scaffold20684s005040.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
iochroma_cyaneum_scaffold20684s005050.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
iochroma_cyaneum_scaffold20696s005250.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
iochroma_cyaneum_scaffold20696s005350.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO