PlantSME Plant secondary metabolism enzyme database

Ipomoea trifida (ipomoea_trifida)

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Imported from atlas release summary for Ipomoea trifida.

2285
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.08% Alkaloid pathway 22.41% Phenylpropanoid pathway 18.64% Flavonoid pathway 13.52% Rosmarinic acid pathway 7.7% Steroid pathway 5.65%
Family Distribution
C4H 6.78% C3'H/CYP98A 6.41% BAHD 5.78% UGT 4.52% 7DLGT 4.38% UFGT 4.38% IFS 4.38% CYP76 4.18%
Other Families 59.19%
More Families (97)
T3O 205 3.68% POD 173 3.1% 4CL 159 2.85% DWF4/CYP90B1 143 2.57% F3'H/CYP75B 128 2.3% BR6OX2/CYP85A2 127 2.28% F3H 120 2.15% CAD 119 2.14% CODM/T6ODM 94 1.69% TPS 88 1.58% GES 84 1.51% TRI/TRII 82 1.47% NMT 82 1.47% SMT1/SMT2/SMT3 80 1.44% CAS 79 1.42% CYP71 79 1.42% STR 73 1.31% CSE 70 1.26% LAC 56 1.01% 7DLH 53 0.95% T16H 52 0.93% GS 52 0.93% CYP90D1 45 0.81% RAS 42 0.75% HCT 41 0.74% COMT 41 0.74% TAT 41 0.74% PYKS 40 0.72% H6H 39 0.7% IO 38 0.68% PMT 37 0.66% BBE 36 0.65% G8O/G8H 34 0.61% IFR 34 0.61% 16OMT 33 0.59% CPD/CYP90A1 33 0.59% F5H/CYP84A 31 0.56% 8HGO 26 0.47% ANR 25 0.45% SGD 24 0.43% SLS 22 0.39% F3'5'H/CYP75A 22 0.39% PAL 21 0.38% CYP51G1 20 0.36% FNS 19 0.34% LAMT 17 0.31% HMGR 17 0.31% BR6OX1/CYP85A1 16 0.29% COR 15 0.27% FPPS 15 0.27% CYP80B1 14 0.25% CCR 14 0.25% NCS 13 0.23% CCoAOMT 13 0.23% ANS/LDOX 12 0.22% CHS 12 0.22% ISY 11 0.2% DFR 11 0.2% SQS/FDFT1 11 0.2% ROT3/CYP90C1 11 0.2% GGPPS 11 0.2% AACT 10 0.18% MPO 9 0.16% CYP719 9 0.16% HPPR 9 0.16% SMO1/SMO2 9 0.16% MVK 9 0.16% TYDC_DDC 8 0.14% CNMT 7 0.13% CPR 7 0.13% MVD 7 0.13% DET2 6 0.11% SQE 5 0.09% CHI 4 0.07% DXS 4 0.07% 6OMT_4OMT_SOMT 3 0.05% TDC 3 0.05% DWF1 3 0.05% MCT/IspD 3 0.05% XMT_MXMT_DXMT 2 0.04% ODC 2 0.04% ADC 2 0.04% FLS 2 0.04% DWF7 2 0.04% CMK/IspE 2 0.04% HDR/IspH 2 0.04% IDI 2 0.04% DXR 2 0.04% HMGS 2 0.04% DWF5 1 0.02% HYD1 1 0.02% FK 1 0.02% CPI1 1 0.02% GPPS 1 0.02% PMK 1 0.02% MDS/IspF 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 733 21 UGT (240) View species results
Alkaloid pathway 512 24 7DLGT (117) View species results
Phenylpropanoid pathway 426 12 POD (167) View species results
Flavonoid pathway 309 12 UFGT (236) View species results
Rosmarinic acid pathway 176 7 C4H (79) View species results
Steroid pathway 129 14 CAS (56) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2294 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 405 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
ipomoea_trifida_itf13g10130.t1 Rosmarinic Acid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
ipomoea_trifida_itf13g18180.t1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
ipomoea_trifida_itf13g19540.t1 Rosmarinic Acid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
ipomoea_trifida_itf14g00020.t1 Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
ipomoea_trifida_itf14g08210.t1 Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
ipomoea_trifida_itf14g13760.t1 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
ipomoea_trifida_itf14g13780.t1 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
ipomoea_trifida_itf15g06660.t1 Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
ipomoea_trifida_itf15g12000.t1 Rosmarinic Acid 4CL low borderline 4CL__00004__sp_O24146_4CL2_TOBAC