Ipomoea trifida (ipomoea_trifida)
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Imported from atlas release summary for Ipomoea trifida.
2285
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2285
Candidate Genes
C4H
6.78%
C3'H/CYP98A
6.41%
BAHD
5.78%
UGT
4.52%
7DLGT
4.38%
UFGT
4.38%
IFS
4.38%
CYP76
4.18%
Other Families
59.19%
More Families (97)
T3O
205
3.68%
POD
173
3.1%
4CL
159
2.85%
DWF4/CYP90B1
143
2.57%
F3'H/CYP75B
128
2.3%
BR6OX2/CYP85A2
127
2.28%
F3H
120
2.15%
CAD
119
2.14%
CODM/T6ODM
94
1.69%
TPS
88
1.58%
GES
84
1.51%
TRI/TRII
82
1.47%
NMT
82
1.47%
SMT1/SMT2/SMT3
80
1.44%
CAS
79
1.42%
CYP71
79
1.42%
STR
73
1.31%
CSE
70
1.26%
LAC
56
1.01%
7DLH
53
0.95%
T16H
52
0.93%
GS
52
0.93%
CYP90D1
45
0.81%
RAS
42
0.75%
HCT
41
0.74%
COMT
41
0.74%
TAT
41
0.74%
PYKS
40
0.72%
H6H
39
0.7%
IO
38
0.68%
PMT
37
0.66%
BBE
36
0.65%
G8O/G8H
34
0.61%
IFR
34
0.61%
16OMT
33
0.59%
CPD/CYP90A1
33
0.59%
F5H/CYP84A
31
0.56%
8HGO
26
0.47%
ANR
25
0.45%
SGD
24
0.43%
SLS
22
0.39%
F3'5'H/CYP75A
22
0.39%
PAL
21
0.38%
CYP51G1
20
0.36%
FNS
19
0.34%
LAMT
17
0.31%
HMGR
17
0.31%
BR6OX1/CYP85A1
16
0.29%
COR
15
0.27%
FPPS
15
0.27%
CYP80B1
14
0.25%
CCR
14
0.25%
NCS
13
0.23%
CCoAOMT
13
0.23%
ANS/LDOX
12
0.22%
CHS
12
0.22%
ISY
11
0.2%
DFR
11
0.2%
SQS/FDFT1
11
0.2%
ROT3/CYP90C1
11
0.2%
GGPPS
11
0.2%
AACT
10
0.18%
MPO
9
0.16%
CYP719
9
0.16%
HPPR
9
0.16%
SMO1/SMO2
9
0.16%
MVK
9
0.16%
TYDC_DDC
8
0.14%
CNMT
7
0.13%
CPR
7
0.13%
MVD
7
0.13%
DET2
6
0.11%
SQE
5
0.09%
CHI
4
0.07%
DXS
4
0.07%
6OMT_4OMT_SOMT
3
0.05%
TDC
3
0.05%
DWF1
3
0.05%
MCT/IspD
3
0.05%
XMT_MXMT_DXMT
2
0.04%
ODC
2
0.04%
ADC
2
0.04%
FLS
2
0.04%
DWF7
2
0.04%
CMK/IspE
2
0.04%
HDR/IspH
2
0.04%
IDI
2
0.04%
DXR
2
0.04%
HMGS
2
0.04%
DWF5
1
0.02%
HYD1
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
GPPS
1
0.02%
PMK
1
0.02%
MDS/IspF
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 733 | 21 | UGT (240) | View species results |
| Alkaloid pathway | 512 | 24 | 7DLGT (117) | View species results |
| Phenylpropanoid pathway | 426 | 12 | POD (167) | View species results |
| Flavonoid pathway | 309 | 12 | UFGT (236) | View species results |
| Rosmarinic acid pathway | 176 | 7 | C4H (79) | View species results |
| Steroid pathway | 129 | 14 | CAS (56) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2294 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 405 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| ipomoea_trifida_itf01g11910.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf01g12950.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf01g28000.t1 | Alkaloid | PMT | medium | borderline |
| ipomoea_trifida_itf02g04740.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf02g10960.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf02g10970.t1 | Alkaloid | PMT | low | borderline |
| ipomoea_trifida_itf02g10980.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf02g11000.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf02g11010.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf02g24330.t1 | Alkaloid | PMT | low | borderline |
| ipomoea_trifida_itf03g00860.t1 | Alkaloid | PMT | medium | borderline |
| ipomoea_trifida_itf03g14630.t1 | Alkaloid | PMT | low | borderline |
| ipomoea_trifida_itf04g21340.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf04g28160.t1 | Alkaloid | PMT | low | borderline |
| ipomoea_trifida_itf05g19450.t1 | Alkaloid | PMT | medium | borderline |
| ipomoea_trifida_itf08g02770.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf08g02790.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf08g02800.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf08g03690.t1 | Alkaloid | PMT | low | borderline |
| ipomoea_trifida_itf08g11860.t1 | Alkaloid | PMT | medium | borderline |
| ipomoea_trifida_itf10g07130.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf10g07960.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf10g07970.t1 | Alkaloid | PMT | low | borderline |
| ipomoea_trifida_itf11g05650.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf11g21670.t1 | Alkaloid | PMT | low | borderline |
| ipomoea_trifida_itf12g26020.t1 | Alkaloid | PMT | medium | borderline |
| ipomoea_trifida_itf13g07160.t1 | Alkaloid | PMT | low | borderline |
| ipomoea_trifida_itf13g11220.t1 | Alkaloid | PMT | low | borderline |
| ipomoea_trifida_itf13g11230.t1 | Alkaloid | PMT | low | borderline |
| ipomoea_trifida_itf13g11270.t1 | Alkaloid | PMT | low | borderline |
| ipomoea_trifida_itf13g11280.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf13g11290.t1 | Alkaloid | PMT | low | borderline |
| ipomoea_trifida_itf13g11410.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf13g11420.t1 | Alkaloid | PMT | low | borderline |
| ipomoea_trifida_itf13g12210.t1 | Alkaloid | PMT | low | borderline |
| ipomoea_trifida_itf13g12240.t1 | Alkaloid | PMT | medium | pass |
| ipomoea_trifida_itf15g20080.t1 | Alkaloid | PMT | medium | pass |